Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
IFT140Q96RY7 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
IFT140Q96RY7 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
IFT140Q96RY7 HNRNPA1P25-201ENST00000422644 937 ntBASIC23.72■■□□□ 1.39
IFT140Q96RY7 AL356000.1-201ENST00000441073 1238 ntBASIC23.72■■□□□ 1.39
IFT140Q96RY7 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 AC004923.3-201ENST00000527532 355 ntBASIC23.72■■□□□ 1.39
IFT140Q96RY7 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
IFT140Q96RY7 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 INO80E-209ENST00000567254 625 ntTSL 2 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 HIST2H4A-201ENST00000578186 583 ntAPPRIS P1 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC23.72■■□□□ 1.39
IFT140Q96RY7 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
IFT140Q96RY7 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 CCT8L1P-201ENST00000465400 1674 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 APOBEC3A-201ENST00000249116 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 PHACTR1-203ENST00000379335 943 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 RN7SL173P-201ENST00000461853 292 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 AC092910.2-201ENST00000491262 348 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 SLC25A15P3-201ENST00000505530 290 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 AL359219.1-201ENST00000556311 934 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 AP001094.3-201ENST00000580491 616 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 AC016582.2-202ENST00000587765 1094 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 AC113385.2-201ENST00000614465 762 ntBASIC23.71■■□□□ 1.39
IFT140Q96RY7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC23.71■■□□□ 1.39
IFT140Q96RY7 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
IFT140Q96RY7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
IFT140Q96RY7 TBC1D3P2-201ENST00000339120 1513 ntTSL 2 BASIC23.7■■□□□ 1.39
IFT140Q96RY7 AP003680.1-201ENST00000598970 3660 ntBASIC23.7■■□□□ 1.39
IFT140Q96RY7 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC23.7■■□□□ 1.39
IFT140Q96RY7 SSR4-202ENST00000370085 526 ntTSL 2 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 RN7SL578P-201ENST00000477781 283 ntBASIC23.7■■□□□ 1.38
IFT140Q96RY7 C1orf198-207ENST00000523410 1041 ntAPPRIS ALT2 TSL 2 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 AC005746.3-201ENST00000614751 393 ntBASIC23.7■■□□□ 1.38
IFT140Q96RY7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 SHMT1P1-201ENST00000419974 1312 ntBASIC23.7■■□□□ 1.38
IFT140Q96RY7 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC23.7■■□□□ 1.38
IFT140Q96RY7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
IFT140Q96RY7 PCDHA14-201ENST00000506751 2298 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 IL1F10-201ENST00000341010 1013 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 PITHD1-202ENST00000374524 1292 ntTSL 3 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 AL161932.2-201ENST00000435436 679 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 AC006328.1-201ENST00000437571 379 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 TREX1-203ENST00000456089 629 ntTSL 3 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 VEGFA-219ENST00000518824 606 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
IFT140Q96RY7 AP000920.1-201ENST00000531824 344 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 AP003040.1-201ENST00000532044 1024 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 RN7SL524P-201ENST00000581152 300 ntBASIC23.69■■□□□ 1.38
IFT140Q96RY7 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC23.69■■□□□ 1.38
IFT140Q96RY7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms