Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 TSPY25P-201ENST00000429463 745 ntBASIC16.03■□□□□ 0.16
LRCH3Q96II8 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AL353150.1-201ENST00000456944 583 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 NAV1-210ENST00000593583 726 ntBASIC16.03■□□□□ 0.16
LRCH3Q96II8 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC063952.3-201ENST00000467756 308 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC023906.1-201ENST00000486386 453 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC106047.2-201ENST00000511723 743 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC023824.1-201ENST00000562945 2975 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 RN7SL440P-201ENST00000577855 343 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 MIR4313-201ENST00000580760 101 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AP005264.6-204ENST00000588436 719 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
LRCH3Q96II8 AC110057.1-201ENST00000636031 898 ntBASIC16.02■□□□□ 0.16
LRCH3Q96II8 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
LRCH3Q96II8 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
LRCH3Q96II8 AC092850.2-201ENST00000623821 2697 ntBASIC16.02■□□□□ 0.15
LRCH3Q96II8 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 CCL25-202ENST00000315626 450 ntTSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 KRT17P5-201ENST00000332088 839 ntBASIC16.01■□□□□ 0.15
LRCH3Q96II8 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 AC026470.1-201ENST00000478038 846 ntBASIC16.01■□□□□ 0.15
LRCH3Q96II8 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 CDC23-208ENST00000505120 455 ntTSL 3 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 AC138409.2-203ENST00000508395 553 ntTSL 4 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 RNA5SP417-201ENST00000516459 108 ntBASIC16.01■□□□□ 0.15
LRCH3Q96II8 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
LRCH3Q96II8 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 TREHP1-201ENST00000531328 465 ntBASIC16.01■□□□□ 0.15
LRCH3Q96II8 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
LRCH3Q96II8 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 65.5 ms