Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NEFHP1-201ENST00000412845 2629 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC009090.5-201ENST00000624886 2285 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 MIR648-201ENST00000385046 94 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC078785.1-204ENST00000460707 764 ntTSL 3 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 RN7SL375P-201ENST00000492442 298 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 GIMAP6-202ENST00000493969 876 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 AL132994.1-201ENST00000554098 400 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 MIR6165-201ENST00000614803 84 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 AC138627.1-201ENST00000641127 1257 ntBASIC14.67□□□□□ -0.06
TTC28Q96AY4 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
TTC28Q96AY4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.67□□□□□ -0.06
TTC28Q96AY4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AL390961.4-201ENST00000623958 2535 ntBASIC14.66□□□□□ -0.06
TTC28Q96AY4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 RN7SL605P-201ENST00000577229 281 ntBASIC14.66□□□□□ -0.06
TTC28Q96AY4 GAS7-216ENST00000583882 553 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 NR1I2-206ENST00000638727 1194 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 PAX6-247ENST00000638965 979 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CACNB4-201ENST00000201943 1389 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 IGFL4-201ENST00000377697 573 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 LINC00388-201ENST00000412714 663 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AC069421.1-201ENST00000447462 323 ntBASIC14.66□□□□□ -0.06
TTC28Q96AY4 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 AL031768.1-201ENST00000606542 701 ntBASIC14.66□□□□□ -0.06
TTC28Q96AY4 SNHG5-213ENST00000622963 753 ntTSL 5 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
TTC28Q96AY4 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC14.66□□□□□ -0.06
TTC28Q96AY4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 GUCY2EP-203ENST00000531117 1918 ntBASIC14.65□□□□□ -0.06
TTC28Q96AY4 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
TTC28Q96AY4 AP001615.1-201ENST00000423276 461 ntTSL 3 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 VSTM1-205ENST00000425006 608 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 DUX4L31-201ENST00000446466 1136 ntBASIC14.65□□□□□ -0.06
TTC28Q96AY4 CICP12-201ENST00000455801 843 ntBASIC14.65□□□□□ -0.06
TTC28Q96AY4 AC099343.1-201ENST00000513481 609 ntBASIC14.65□□□□□ -0.06
TTC28Q96AY4 AC104117.4-201ENST00000521486 847 ntBASIC14.65□□□□□ -0.06
TTC28Q96AY4 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 CARHSP1-208ENST00000567554 598 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 MIR663AHG-218ENST00000598448 804 ntTSL 5 BASIC14.65□□□□□ -0.06
TTC28Q96AY4 AL121992.3-201ENST00000606186 346 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms