Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 RPL17P11-201ENST00000417593 544 ntBASIC14.9□□□□□ -0.02
HMGB4Q8WW32 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 TLE1P1-201ENST00000422965 589 ntBASIC14.9□□□□□ -0.02
HMGB4Q8WW32 AC078875.1-201ENST00000431907 724 ntBASIC14.9□□□□□ -0.02
HMGB4Q8WW32 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 IQSEC3P1-201ENST00000538799 536 ntBASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PAM16-211ENST00000575848 518 ntTSL 3 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 MIR4754-201ENST00000582477 89 ntBASIC14.9□□□□□ -0.02
HMGB4Q8WW32 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HMGB4Q8WW32 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 DPP6-203ENST00000404039 4798 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 KRT8P21-201ENST00000430398 1491 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AC023090.2-201ENST00000625182 2110 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 NOC2LP1-201ENST00000450578 752 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 CICP12-201ENST00000455801 843 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 PFN2-206ENST00000461930 606 ntTSL 4 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AC027601.3-201ENST00000622907 509 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AC063926.3-201ENST00000624734 5658 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 AL365203.3-201ENST00000609742 2057 ntBASIC14.89□□□□□ -0.03
HMGB4Q8WW32 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms