Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
COL28A1Q2UY09 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 SLC16A6P1-201ENST00000413214 1059 ntBASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AL365436.2-201ENST00000434112 526 ntTSL 4 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 RTN3P1-201ENST00000536295 711 ntBASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AC013355.1-201ENST00000562625 723 ntBASIC14.38□□□□□ -0.11
COL28A1Q2UY09 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AP003392.6-201ENST00000607709 325 ntBASIC14.38□□□□□ -0.11
COL28A1Q2UY09 AC006453.1-201ENST00000636037 1257 ntBASIC14.38□□□□□ -0.11
COL28A1Q2UY09 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
COL28A1Q2UY09 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AC023157.3-201ENST00000619086 2088 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 DPM3-202ENST00000368399 517 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AL353637.1-201ENST00000451571 732 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RPL18P13-201ENST00000478088 569 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AC116345.2-201ENST00000512837 523 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 TVP23C-205ENST00000518321 1080 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 NEU3-205ENST00000531619 582 ntTSL 5 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 EID1-202ENST00000560490 584 ntTSL 3 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 RN7SL48P-201ENST00000579283 293 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC14.37□□□□□ -0.11
COL28A1Q2UY09 DGAT2L7P-201ENST00000602462 744 ntBASIC14.37□□□□□ -0.11
COL28A1Q2UY09 AC127024.7-201ENST00000625101 200 ntBASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms