Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 SHC1P1-201ENST00000425230 1745 ntBASIC14.68□□□□□ -0.06
LIMK1P53667 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC14.68□□□□□ -0.06
LIMK1P53667 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIMK1P53667 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIMK1P53667 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LIMK1P53667 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
LIMK1P53667 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 AK6-201ENST00000380818 1183 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC14.67□□□□□ -0.06
LIMK1P53667 AC012441.2-201ENST00000444843 739 ntBASIC14.67□□□□□ -0.06
LIMK1P53667 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 AC008723.1-201ENST00000506922 207 ntBASIC14.67□□□□□ -0.06
LIMK1P53667 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC14.67□□□□□ -0.06
LIMK1P53667 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
LIMK1P53667 POLL-206ENST00000370172 2308 ntTSL 2 BASIC14.67□□□□□ -0.06
LIMK1P53667 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LIMK1P53667 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.67□□□□□ -0.06
LIMK1P53667 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.66□□□□□ -0.06
LIMK1P53667 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 OR2K2-202ENST00000374428 1038 ntBASIC14.66□□□□□ -0.06
LIMK1P53667 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
LIMK1P53667 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 FAU-202ENST00000434372 533 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 MIR4313-201ENST00000580760 101 ntBASIC14.66□□□□□ -0.06
LIMK1P53667 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 AC002472.3-201ENST00000640124 621 ntBASIC14.66□□□□□ -0.06
LIMK1P53667 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
LIMK1P53667 FKBP4P6-201ENST00000457486 1332 ntBASIC14.66□□□□□ -0.06
LIMK1P53667 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.66□□□□□ -0.06
LIMK1P53667 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LIMK1P53667 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LIMK1P53667 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.65□□□□□ -0.06
LIMK1P53667 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
LIMK1P53667 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 157.3 ms