Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.69■□□□□ 0.26
CIITAP33076 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC16.69■□□□□ 0.26
CIITAP33076 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 AL022328.3-201ENST00000607943 679 ntBASIC16.69■□□□□ 0.26
CIITAP33076 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 MIR6720-201ENST00000611664 98 ntBASIC16.69■□□□□ 0.26
CIITAP33076 AP000346.4-201ENST00000614827 381 ntBASIC16.69■□□□□ 0.26
CIITAP33076 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 AGGF1P1-201ENST00000509500 2073 ntBASIC16.69■□□□□ 0.26
CIITAP33076 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC16.69■□□□□ 0.26
CIITAP33076 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 AC006504.5-208ENST00000588784 2401 ntBASIC16.69■□□□□ 0.26
CIITAP33076 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 AC009093.10-201ENST00000641956 1442 ntBASIC16.69■□□□□ 0.26
CIITAP33076 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.69■□□□□ 0.26
CIITAP33076 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CIITAP33076 OGFOD1-209ENST00000568397 1681 ntTSL 5 BASIC16.69■□□□□ 0.26
CIITAP33076 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
CIITAP33076 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 AC012441.2-201ENST00000444843 739 ntBASIC16.68■□□□□ 0.26
CIITAP33076 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC16.68■□□□□ 0.26
CIITAP33076 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.68■□□□□ 0.26
CIITAP33076 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
CIITAP33076 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.68■□□□□ 0.26
CIITAP33076 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
CIITAP33076 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
CIITAP33076 GRN-222ENST00000639447 1314 ntTSL 2 BASIC16.68■□□□□ 0.26
CIITAP33076 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.68■□□□□ 0.26
CIITAP33076 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 AC015688.4-201ENST00000580780 1647 ntBASIC16.67■□□□□ 0.26
CIITAP33076 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC16.67■□□□□ 0.26
CIITAP33076 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CIITAP33076 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CIITAP33076 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CIITAP33076 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms