Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
BDNFP23560 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.68■□□□□ 0.1
BDNFP23560 ALG3P1-201ENST00000508806 1114 ntBASIC15.68■□□□□ 0.1
BDNFP23560 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.68■□□□□ 0.1
BDNFP23560 AC126915.1-201ENST00000522847 1038 ntBASIC15.68■□□□□ 0.1
BDNFP23560 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC15.68■□□□□ 0.1
BDNFP23560 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.68■□□□□ 0.1
BDNFP23560 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 AC009955.4-201ENST00000597192 544 ntBASIC15.68■□□□□ 0.1
BDNFP23560 AL162426.1-201ENST00000624141 743 ntBASIC15.68■□□□□ 0.1
BDNFP23560 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC15.68■□□□□ 0.1
BDNFP23560 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
BDNFP23560 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.68■□□□□ 0.1
BDNFP23560 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.68■□□□□ 0.1
BDNFP23560 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
BDNFP23560 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.67■□□□□ 0.1
BDNFP23560 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 RER1-203ENST00000378513 3000 ntTSL 3 BASIC15.67■□□□□ 0.1
BDNFP23560 KRT8P29-201ENST00000420409 1371 ntBASIC15.67■□□□□ 0.1
BDNFP23560 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 RNMTL1P1-201ENST00000454103 560 ntBASIC15.67■□□□□ 0.1
BDNFP23560 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC15.67■□□□□ 0.1
BDNFP23560 AC100827.2-201ENST00000563214 1194 ntBASIC15.67■□□□□ 0.1
BDNFP23560 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC15.67■□□□□ 0.1
BDNFP23560 AL451050.2-201ENST00000606967 682 ntBASIC15.67■□□□□ 0.1
BDNFP23560 DIO1-215ENST00000610607 796 ntTSL 5 BASIC15.67■□□□□ 0.1
BDNFP23560 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 AC018442.1-201ENST00000421439 2061 ntBASIC15.67■□□□□ 0.1
BDNFP23560 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.67■□□□□ 0.1
BDNFP23560 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
BDNFP23560 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
BDNFP23560 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.66■□□□□ 0.1
BDNFP23560 AL136172.1-201ENST00000598590 1394 ntBASIC15.66■□□□□ 0.1
BDNFP23560 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
BDNFP23560 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 PUDPP3-201ENST00000445368 636 ntBASIC15.66■□□□□ 0.1
BDNFP23560 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC15.66■□□□□ 0.1
BDNFP23560 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.66■□□□□ 0.1
BDNFP23560 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 AC008825.2-201ENST00000603374 718 ntBASIC15.66■□□□□ 0.1
BDNFP23560 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC15.66■□□□□ 0.1
BDNFP23560 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC15.66■□□□□ 0.1
BDNFP23560 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
BDNFP23560 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms