Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 SIX1-203ENST00000554986 1959 ntTSL 3 BASIC11.6□□□□□ -0.55
CXCL1P09341 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC11.6□□□□□ -0.55
CXCL1P09341 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 FAM197Y8-203ENST00000450145 560 ntBASIC11.6□□□□□ -0.55
CXCL1P09341 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC11.6□□□□□ -0.55
CXCL1P09341 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 FAM215A-202ENST00000632077 792 ntBASIC11.6□□□□□ -0.55
CXCL1P09341 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 MIR193BHG-211ENST00000641433 5365 ntBASIC11.6□□□□□ -0.55
CXCL1P09341 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 RIPK4-201ENST00000332512 3889 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 SYNPO-205ENST00000522122 5098 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
CXCL1P09341 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 PDE4A-204ENST00000440014 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 KRT8P37-201ENST00000451609 1420 ntBASIC11.6□□□□□ -0.55
CXCL1P09341 SCAF4-201ENST00000286835 4193 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
CXCL1P09341 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
CXCL1P09341 AGGF1P1-201ENST00000509500 2073 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 STRA6-222ENST00000616000 2843 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 EPS15L1-202ENST00000455140 3266 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 PLA2G6-202ENST00000335539 3060 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 KCNN1-201ENST00000222249 3625 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 CDHR5-202ENST00000358353 3635 ntAPPRIS P4 TSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 GOLGA6L10-209ENST00000621197 4160 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 AC007787.1-201ENST00000588095 1583 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 TPO-202ENST00000345913 3145 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 LOXL4-201ENST00000260702 3653 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 MAP7D3-201ENST00000316077 4567 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC11.59□□□□□ -0.55
CXCL1P09341 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC11.59□□□□□ -0.55
CXCL1P09341 UPK3BP1-201ENST00000428678 509 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 CRCP-205ENST00000431089 942 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC11.59□□□□□ -0.55
CXCL1P09341 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 KRT18P35-201ENST00000510488 1269 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC11.59□□□□□ -0.55
CXCL1P09341 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC11.59□□□□□ -0.55
CXCL1P09341 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC11.59□□□□□ -0.55
CXCL1P09341 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC11.59□□□□□ -0.55
CXCL1P09341 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 AC110048.1-201ENST00000604293 2157 ntBASIC11.59□□□□□ -0.55
CXCL1P09341 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
CXCL1P09341 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 PDZRN3-208ENST00000479530 2778 ntTSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 URGCP-207ENST00000453200 4042 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
CXCL1P09341 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CXCL1P09341 NTRK2-203ENST00000323115 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms