Protein–RNA interactions for Protein: P03897

MT-ND3, NADH-ubiquinone oxidoreductase chain 3, humanhuman

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MT-ND3P03897 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
MT-ND3P03897 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.28■□□□□ 0.04
MT-ND3P03897 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 ROBO4-201ENST00000306534 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 SPDYE19P-201ENST00000338590 713 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
MT-ND3P03897 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC011495.1-201ENST00000498085 584 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC044860.1-202ENST00000559481 777 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 SAMD11P1-201ENST00000571429 661 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC15.28■□□□□ 0.04
MT-ND3P03897 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC025048.3-201ENST00000590609 569 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC005702.4-201ENST00000618393 416 ntBASIC15.28■□□□□ 0.04
MT-ND3P03897 SRP9-204ENST00000619790 377 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
MT-ND3P03897 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 IL17RD-208ENST00000640796 2345 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.28■□□□□ 0.04
MT-ND3P03897 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
MT-ND3P03897 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 CNOT3-201ENST00000221232 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 GID4-201ENST00000268719 4237 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
MT-ND3P03897 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 AP006294.1-201ENST00000415407 339 ntBASIC15.27■□□□□ 0.04
MT-ND3P03897 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.27■□□□□ 0.04
MT-ND3P03897 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.27■□□□□ 0.04
MT-ND3P03897 RPL13P2-201ENST00000440687 659 ntBASIC15.27■□□□□ 0.04
MT-ND3P03897 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 AC055876.2-201ENST00000531834 546 ntBASIC15.27■□□□□ 0.04
MT-ND3P03897 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
MT-ND3P03897 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MT-ND3P03897 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.27■□□□□ 0.04
MT-ND3P03897 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC15.27■□□□□ 0.03
MT-ND3P03897 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MT-ND3P03897 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MT-ND3P03897 SBF1-202ENST00000380817 8008 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MT-ND3P03897 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.27■□□□□ 0.03
MT-ND3P03897 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms