Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.05□□□□□ -0.16
LDB3O75112 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
LDB3O75112 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
LDB3O75112 AC139749.1-202ENST00000617529 3139 ntBASIC14.04□□□□□ -0.16
LDB3O75112 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 GOLGA8R-201ENST00000327271 1896 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 SNX21-203ENST00000372541 771 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.04□□□□□ -0.16
LDB3O75112 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.04□□□□□ -0.16
LDB3O75112 TLE1P1-201ENST00000422965 589 ntBASIC14.04□□□□□ -0.16
LDB3O75112 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 COX5BP1-201ENST00000507622 393 ntBASIC14.04□□□□□ -0.16
LDB3O75112 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC14.04□□□□□ -0.16
LDB3O75112 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.04□□□□□ -0.16
LDB3O75112 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
LDB3O75112 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 AC133552.6-201ENST00000613406 534 ntBASIC14.04□□□□□ -0.16
LDB3O75112 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.04□□□□□ -0.16
LDB3O75112 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 AL365209.1-201ENST00000624418 6473 ntBASIC14.04□□□□□ -0.16
LDB3O75112 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
LDB3O75112 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.04□□□□□ -0.16
LDB3O75112 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
LDB3O75112 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 AL390755.1-201ENST00000623716 2027 ntBASIC14.03□□□□□ -0.16
LDB3O75112 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
LDB3O75112 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 HLA-V-201ENST00000429037 534 ntBASIC14.03□□□□□ -0.16
LDB3O75112 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC14.03□□□□□ -0.16
LDB3O75112 KRT223P-202ENST00000449164 1292 ntBASIC14.03□□□□□ -0.16
LDB3O75112 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 CFL1-212ENST00000531413 636 ntTSL 3 BASIC14.03□□□□□ -0.16
LDB3O75112 AP005482.1-201ENST00000563722 1273 ntBASIC14.03□□□□□ -0.16
LDB3O75112 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 MIR6805-201ENST00000615055 62 ntBASIC14.03□□□□□ -0.16
LDB3O75112 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
LDB3O75112 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.03□□□□□ -0.16
LDB3O75112 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC14.03□□□□□ -0.16
LDB3O75112 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
LDB3O75112 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms