Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 AC131274.2-201ENST00000580697 1507 ntBASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HIF3AQ9Y2N7 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 AC120024.1-201ENST00000562672 995 ntBASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 PVT1_1.1-201ENST00000615125 194 ntBASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HIF3AQ9Y2N7 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC20.61■□□□□ 0.89
HIF3AQ9Y2N7 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC20.61■□□□□ 0.89
HIF3AQ9Y2N7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.61■□□□□ 0.89
HIF3AQ9Y2N7 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HIF3AQ9Y2N7 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIF3AQ9Y2N7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HIF3AQ9Y2N7 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC20.6■□□□□ 0.89
HIF3AQ9Y2N7 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.6■□□□□ 0.89
HIF3AQ9Y2N7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.6■□□□□ 0.89
HIF3AQ9Y2N7 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
HIF3AQ9Y2N7 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 KRT18P24-201ENST00000344739 1156 ntBASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.59■□□□□ 0.89
HIF3AQ9Y2N7 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
HIF3AQ9Y2N7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC20.58■□□□□ 0.89
HIF3AQ9Y2N7 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC20.58■□□□□ 0.89
HIF3AQ9Y2N7 AC010980.1-201ENST00000587192 1142 ntBASIC20.58■□□□□ 0.89
HIF3AQ9Y2N7 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.58■□□□□ 0.88
HIF3AQ9Y2N7 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.58■□□□□ 0.88
HIF3AQ9Y2N7 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
HIF3AQ9Y2N7 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 AC012354.3-201ENST00000623734 483 ntBASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.57■□□□□ 0.88
HIF3AQ9Y2N7 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 LBH-205ENST00000407930 756 ntTSL 2 BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 THA1P-201ENST00000590384 1145 ntBASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
HIF3AQ9Y2N7 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 MIR4281-201ENST00000580852 62 ntBASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
HIF3AQ9Y2N7 ALDH1A3-203ENST00000557963 1670 ntBASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 AC068473.5-201ENST00000616428 2072 ntBASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 AC012676.1-201ENST00000574705 1949 ntBASIC20.54■□□□□ 0.88
HIF3AQ9Y2N7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms