Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SEC61A2Q9H9S3 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.41■□□□□ 0.86
SEC61A2Q9H9S3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 TK2-216ENST00000564917 1156 ntTSL 3 BASIC20.4■□□□□ 0.86
SEC61A2Q9H9S3 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
SEC61A2Q9H9S3 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
SEC61A2Q9H9S3 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
SEC61A2Q9H9S3 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 KRT18P24-201ENST00000344739 1156 ntBASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.39■□□□□ 0.85
SEC61A2Q9H9S3 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC20.38■□□□□ 0.85
SEC61A2Q9H9S3 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SEC61A2Q9H9S3 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 MIR4281-201ENST00000580852 62 ntBASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
SEC61A2Q9H9S3 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SEC61A2Q9H9S3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SEC61A2Q9H9S3 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.33■□□□□ 0.85
SEC61A2Q9H9S3 AL022069.1-201ENST00000568025 1636 ntBASIC20.33■□□□□ 0.84
SEC61A2Q9H9S3 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SEC61A2Q9H9S3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SEC61A2Q9H9S3 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SEC61A2Q9H9S3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.33■□□□□ 0.84
SEC61A2Q9H9S3 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEC61A2Q9H9S3 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC20.32■□□□□ 0.84
SEC61A2Q9H9S3 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEC61A2Q9H9S3 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SEC61A2Q9H9S3 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SEC61A2Q9H9S3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms