Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC27.1■■□□□ 1.93
RNF41Q9H4P4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
RNF41Q9H4P4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC27.08■■□□□ 1.93
RNF41Q9H4P4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC27.08■■□□□ 1.93
RNF41Q9H4P4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC27.08■■□□□ 1.93
RNF41Q9H4P4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC27.08■■□□□ 1.93
RNF41Q9H4P4 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC27.08■■□□□ 1.93
RNF41Q9H4P4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
RNF41Q9H4P4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
RNF41Q9H4P4 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC27.07■■□□□ 1.92
RNF41Q9H4P4 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC27.07■■□□□ 1.92
RNF41Q9H4P4 ALDH1A3-203ENST00000557963 1670 ntBASIC27.07■■□□□ 1.92
RNF41Q9H4P4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RNF41Q9H4P4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
RNF41Q9H4P4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC27.06■■□□□ 1.92
RNF41Q9H4P4 AC005703.6-201ENST00000623265 1329 ntBASIC27.06■■□□□ 1.92
RNF41Q9H4P4 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC27.06■■□□□ 1.92
RNF41Q9H4P4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
RNF41Q9H4P4 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 SHD-204ENST00000599689 1729 ntTSL 5 BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
RNF41Q9H4P4 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
RNF41Q9H4P4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC27.02■■□□□ 1.92
RNF41Q9H4P4 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.02■■□□□ 1.92
RNF41Q9H4P4 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC27.02■■□□□ 1.92
RNF41Q9H4P4 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
RNF41Q9H4P4 EI24-204ENST00000527235 1625 ntTSL 5 BASIC27.01■■□□□ 1.92
RNF41Q9H4P4 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC27.01■■□□□ 1.92
RNF41Q9H4P4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC27.01■■□□□ 1.91
RNF41Q9H4P4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC27■■□□□ 1.91
RNF41Q9H4P4 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
RNF41Q9H4P4 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC27■■□□□ 1.91
RNF41Q9H4P4 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
RNF41Q9H4P4 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC27■■□□□ 1.91
RNF41Q9H4P4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC27■■□□□ 1.91
RNF41Q9H4P4 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC27■■□□□ 1.91
RNF41Q9H4P4 AC004812.2-201ENST00000611079 2094 ntBASIC27■■□□□ 1.91
RNF41Q9H4P4 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC27■■□□□ 1.91
RNF41Q9H4P4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
RNF41Q9H4P4 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 AL117332.1-201ENST00000622628 974 ntBASIC26.98■■□□□ 1.91
RNF41Q9H4P4 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
RNF41Q9H4P4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 AL356740.2-201ENST00000601559 647 ntBASIC26.97■■□□□ 1.91
RNF41Q9H4P4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.97■■□□□ 1.91
RNF41Q9H4P4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC26.96■■□□□ 1.91
RNF41Q9H4P4 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC26.96■■□□□ 1.91
RNF41Q9H4P4 AK3-203ENST00000447596 705 ntTSL 2 BASIC26.96■■□□□ 1.91
RNF41Q9H4P4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC26.96■■□□□ 1.91
RNF41Q9H4P4 MIR3621-201ENST00000580529 85 ntBASIC26.96■■□□□ 1.91
RNF41Q9H4P4 AC131212.1-201ENST00000613771 668 ntBASIC26.96■■□□□ 1.91
RNF41Q9H4P4 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms