Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
SHANK3Q9BYB0 AC092171.4-201ENST00000609130 632 ntBASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 AC008764.7-201ENST00000593779 1081 ntBASIC30.16■■■□□ 2.42
SHANK3Q9BYB0 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
SHANK3Q9BYB0 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
SHANK3Q9BYB0 AL031602.1-201ENST00000633169 911 ntBASIC30.15■■■□□ 2.42
SHANK3Q9BYB0 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
SHANK3Q9BYB0 NKILA-201ENST00000613231 537 ntTSL 4 BASIC30.14■■■□□ 2.42
SHANK3Q9BYB0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC30.14■■■□□ 2.42
SHANK3Q9BYB0 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
SHANK3Q9BYB0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
SHANK3Q9BYB0 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.41
SHANK3Q9BYB0 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.14■■■□□ 2.41
SHANK3Q9BYB0 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 PARL-206ENST00000435888 1098 ntTSL 5 BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC30.13■■■□□ 2.41
SHANK3Q9BYB0 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHANK3Q9BYB0 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
SHANK3Q9BYB0 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 IRS3P-201ENST00000223076 1006 ntBASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
SHANK3Q9BYB0 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 SLC6A10P-202ENST00000431994 2058 ntBASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
SHANK3Q9BYB0 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 HES6-206ENST00000409574 738 ntTSL 2 BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 IKBKGP1-201ENST00000612193 1073 ntBASIC30.09■■■□□ 2.41
SHANK3Q9BYB0 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC30.08■■■□□ 2.41
SHANK3Q9BYB0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SHANK3Q9BYB0 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SHANK3Q9BYB0 KRT18P5-201ENST00000436075 1291 ntBASIC30.07■■■□□ 2.4
SHANK3Q9BYB0 SLC47A1P1-202ENST00000449666 945 ntBASIC30.07■■■□□ 2.4
SHANK3Q9BYB0 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC30.06■■■□□ 2.4
SHANK3Q9BYB0 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC30.06■■■□□ 2.4
SHANK3Q9BYB0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 SP2-202ENST00000613139 908 ntTSL 5 BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 AC241377.3-202ENST00000626088 1088 ntBASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 AC241585.3-202ENST00000628937 1088 ntBASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 AC245100.8-202ENST00000629247 1058 ntBASIC30.05■■■□□ 2.4
SHANK3Q9BYB0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.04■■■□□ 2.4
SHANK3Q9BYB0 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.03■■■□□ 2.4
SHANK3Q9BYB0 AC090192.1-201ENST00000517740 490 ntBASIC30.03■■■□□ 2.4
SHANK3Q9BYB0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC30.03■■■□□ 2.4
SHANK3Q9BYB0 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
SHANK3Q9BYB0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 AC027612.3-201ENST00000413684 1047 ntBASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 BX842568.3-201ENST00000418104 571 ntBASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC30.02■■■□□ 2.4
SHANK3Q9BYB0 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.01■■■□□ 2.4
SHANK3Q9BYB0 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC30.01■■■□□ 2.4
SHANK3Q9BYB0 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC30.01■■■□□ 2.39
SHANK3Q9BYB0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC30.01■■■□□ 2.39
SHANK3Q9BYB0 AC034268.1-201ENST00000441047 882 ntBASIC30.01■■■□□ 2.39
SHANK3Q9BYB0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms