Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
VPS13AQ96RL7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
VPS13AQ96RL7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.98■■□□□ 1.27
VPS13AQ96RL7 AC006455.2-201ENST00000429931 906 ntBASIC22.98■■□□□ 1.27
VPS13AQ96RL7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
VPS13AQ96RL7 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC22.98■■□□□ 1.27
VPS13AQ96RL7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.98■■□□□ 1.27
VPS13AQ96RL7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
VPS13AQ96RL7 KRT18P14-201ENST00000534205 1250 ntBASIC22.97■■□□□ 1.27
VPS13AQ96RL7 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
VPS13AQ96RL7 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS13AQ96RL7 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
VPS13AQ96RL7 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS13AQ96RL7 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
VPS13AQ96RL7 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.95■■□□□ 1.27
VPS13AQ96RL7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC22.95■■□□□ 1.27
VPS13AQ96RL7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC22.95■■□□□ 1.27
VPS13AQ96RL7 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 AC006015.1-201ENST00000429970 570 ntBASIC22.95■■□□□ 1.26
VPS13AQ96RL7 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.95■■□□□ 1.26
VPS13AQ96RL7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 AC096887.2-201ENST00000623443 1957 ntBASIC22.94■■□□□ 1.26
VPS13AQ96RL7 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 GXYLT1P2-201ENST00000433312 1230 ntBASIC22.94■■□□□ 1.26
VPS13AQ96RL7 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
VPS13AQ96RL7 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
VPS13AQ96RL7 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 REST-206ENST00000612429 1376 ntTSL 5 BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 REST-207ENST00000616975 1370 ntTSL 5 BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 MIR3181-201ENST00000578512 73 ntBASIC22.92■■□□□ 1.26
VPS13AQ96RL7 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
VPS13AQ96RL7 ST7-205ENST00000393446 2114 ntTSL 5 BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 KRT18P61-201ENST00000585825 1298 ntBASIC22.91■■□□□ 1.26
VPS13AQ96RL7 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
VPS13AQ96RL7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 CROCCP5-201ENST00000436658 830 ntBASIC22.9■■□□□ 1.26
VPS13AQ96RL7 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC22.9■■□□□ 1.26
VPS13AQ96RL7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.89■■□□□ 1.26
VPS13AQ96RL7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
VPS13AQ96RL7 AC142472.1-201ENST00000612013 1741 ntBASIC22.89■■□□□ 1.26
VPS13AQ96RL7 HES6-206ENST00000409574 738 ntTSL 2 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.89■■□□□ 1.25
VPS13AQ96RL7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.89■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms