Protein–RNA interactions for Protein: Q01081

U2AF1, Splicing factor U2AF 35 kDa subunit, humanhuman

Known RBP eCLIP

Length 240 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1Q01081 AHI1-209ENST00000498558 900 ntTSL 24.56□□□□□ -1.682e-6■■■■□ 21.7
U2AF1Q01081 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC4.37□□□□□ -1.712e-6■■■■□ 21.7
U2AF1Q01081 AHI1-211ENST00000527681 550 ntTSL 54.28□□□□□ -1.722e-6■■■■□ 21.7
U2AF1Q01081 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.17□□□□□ -1.742e-6■■■■□ 21.7
U2AF1Q01081 AC138393.1-204ENST00000449219 758 ntTSL 24.1□□□□□ -1.759e-12■■■■□ 21.7
U2AF1Q01081 TMEM138-211ENST00000543833 534 ntTSL 24.05□□□□□ -1.769e-12■■■■□ 21.7
U2AF1Q01081 AC138393.1-205ENST00000572124 2669 ntTSL 23.7□□□□□ -1.829e-12■■■■□ 21.7
U2AF1Q01081 AHI1-203ENST00000367799 2340 ntAPPRIS ALT2 TSL 1 (best)3.58□□□□□ -1.842e-6■■■■□ 21.7
U2AF1Q01081 TOP1-201ENST00000361337 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.552e-15■■■■□ 21.7
U2AF1Q01081 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.315e-7■■■■□ 21.6
U2AF1Q01081 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.075e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC18.65■□□□□ 0.585e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC18.16■□□□□ 0.55e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-203ENST00000371674 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.175e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-206ENST00000415862 2387 ntTSL 1 (best) BASIC13.91□□□□□ -0.185e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-217ENST00000486653 563 ntTSL 413.49□□□□□ -0.255e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-218ENST00000490289 628 ntTSL 312.93□□□□□ -0.345e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC11.1□□□□□ -0.635e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-205ENST00000396059 1983 ntTSL 1 (best)11□□□□□ -0.655e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-202ENST00000371657 1973 ntTSL 4 BASIC10.19□□□□□ -0.785e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC10.14□□□□□ -0.795e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-211ENST00000467839 566 ntTSL 29.11□□□□□ -0.955e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC9.07□□□□□ -0.965e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-208ENST00000432266 569 ntTSL 48.07□□□□□ -1.125e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-216ENST00000483534 1155 ntTSL 1 (best)8.05□□□□□ -1.125e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-221ENST00000493090 563 ntTSL 46.76□□□□□ -1.335e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-219ENST00000490555 549 ntTSL 46.29□□□□□ -1.45e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-213ENST00000470565 728 ntTSL 35.28□□□□□ -1.565e-7■■■■□ 21.6
U2AF1Q01081 MAN2A1-202ENST00000502261 448 ntTSL 54.87□□□□□ -1.635e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-220ENST00000492371 535 ntTSL 34.41□□□□□ -1.75e-7■■■■□ 21.6
U2AF1Q01081 UBE2V1-214ENST00000472923 421 ntTSL 53.98□□□□□ -1.775e-7■■■■□ 21.6
U2AF1Q01081 MAN2A1-205ENST00000508043 546 ntTSL 32.73□□□□□ -1.975e-7■■■■□ 21.6
U2AF1Q01081 C1RL-203ENST00000534950 582 ntTSL 324.72■■□□□ 1.559e-7■■■■□ 21.6
U2AF1Q01081 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.95■□□□□ 0.949e-7■■■■□ 21.6
U2AF1Q01081 C1RL-201ENST00000266542 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.229e-7■■■■□ 21.6
U2AF1Q01081 C1RL-208ENST00000543933 592 ntTSL 515.27■□□□□ 0.049e-7■■■■□ 21.6
U2AF1Q01081 C1RL-205ENST00000537833 561 ntTSL 315.25■□□□□ 0.039e-7■■■■□ 21.6
U2AF1Q01081 C1RL-204ENST00000534969 532 ntTSL 315.25■□□□□ 0.039e-7■■■■□ 21.6
U2AF1Q01081 C1RL-206ENST00000539803 1038 ntTSL 513.76□□□□□ -0.219e-7■■■■□ 21.6
U2AF1Q01081 C1RL-211ENST00000545280 449 ntTSL 3 BASIC13.22□□□□□ -0.299e-7■■■■□ 21.6
U2AF1Q01081 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.732e-15■■■■□ 21.6
U2AF1Q01081 RCOR1-204ENST00000560472 411 ntTSL 35.14□□□□□ -1.592e-15■■■■□ 21.6
U2AF1Q01081 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC17.5■□□□□ 0.392e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-202ENST00000535593 813 ntTSL 1 (best)10.62□□□□□ -0.712e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC9.23□□□□□ -0.932e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC8.69□□□□□ -1.022e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-207ENST00000542194 562 ntTSL 38.54□□□□□ -1.042e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-203ENST00000539025 1210 ntTSL 1 (best)8.36□□□□□ -1.072e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-208ENST00000545093 700 ntTSL 27.5□□□□□ -1.212e-7■■■■□ 21.6
U2AF1Q01081 GOLT1B-204ENST00000539663 876 ntTSL 36.85□□□□□ -1.312e-7■■■■□ 21.6
U2AF1Q01081 FRRS1-201ENST00000287474 2678 ntAPPRIS P1 TSL 2 BASIC11.36□□□□□ -0.596e-8■■■■□ 21.6
U2AF1Q01081 HNRNPA2B1-203ENST00000360787 1724 ntTSL 519.36■□□□□ 0.697e-11■■■■□ 21.6
U2AF1Q01081 HNRNPA2B1-204ENST00000463181 6284 ntTSL 217.63■□□□□ 0.417e-11■■■■□ 21.6
U2AF1Q01081 HNRNPA2B1-208ENST00000618183 3539 ntTSL 5 BASIC14.23□□□□□ -0.137e-11■■■■□ 21.6
U2AF1Q01081 HNRNPA2B1-201ENST00000354667 3664 ntAPPRIS ALT1 TSL 1 (best) BASIC10.62□□□□□ -0.717e-11■■■■□ 21.6
U2AF1Q01081 ATP1B3-204ENST00000466678 1708 ntTSL 318.58■□□□□ 0.579e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-201ENST00000286371 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.479e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-202ENST00000462082 837 ntTSL 3 BASIC10.29□□□□□ -0.769e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-203ENST00000465172 1951 ntTSL 28.59□□□□□ -1.039e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-207ENST00000484727 657 ntTSL 27.82□□□□□ -1.169e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-208ENST00000486782 229 ntTSL 25.17□□□□□ -1.589e-15■■■■□ 21.6
U2AF1Q01081 ATP1B3-209ENST00000487199 421 ntTSL 33.9□□□□□ -1.799e-15■■■■□ 21.6
U2AF1Q01081 SNHG1-201ENST00000535076 849 ntTSL 25.99□□□□□ -1.458e-8■■■■□ 21.6
U2AF1Q01081 CD46-218ENST00000496723 661 ntTSL 54.8□□□□□ -1.646e-10■■■■□ 21.6
U2AF1Q01081 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC29.37■■■□□ 2.293e-7■■■■□ 21.6
U2AF1Q01081 PIKFYVE-206ENST00000443896 3282 ntTSL 1 (best)21.07■□□□□ 0.963e-7■■■■□ 21.6
U2AF1Q01081 PIKFYVE-207ENST00000452564 4214 ntTSL 28.95□□□□□ -0.983e-7■■■■□ 21.6
U2AF1Q01081 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.533e-7■■■■□ 21.6
U2AF1Q01081 AFDN-221ENST00000511637 5999 ntTSL 1 (best)12.41□□□□□ -0.421e-8■■■■□ 21.5
U2AF1Q01081 FNBP4-201ENST00000263773 3972 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.022e-8■■■■□ 21.5
U2AF1Q01081 CCDC18-AS1-217ENST00000449305 748 ntTSL 220.2■□□□□ 0.828e-7■■■■□ 21.5
U2AF1Q01081 CCDC18-AS1-223ENST00000457387 806 ntTSL 217.1■□□□□ 0.338e-7■■■■□ 21.5
U2AF1Q01081 DGCR8-210ENST00000498171 3661 ntTSL 1 (best)13.9□□□□□ -0.182e-6■■■■□ 21.5
U2AF1Q01081 CCDC18-AS1-214ENST00000445076 620 ntTSL 212.1□□□□□ -0.478e-7■■■■□ 21.5
U2AF1Q01081 CCDC18-AS1-220ENST00000452347 969 ntTSL 29.89□□□□□ -0.838e-7■■■■□ 21.5
U2AF1Q01081 CCDC18-AS1-211ENST00000438777 752 ntTSL 37.52□□□□□ -1.218e-7■■■■□ 21.5
U2AF1Q01081 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.215e-6■■■■□ 21.5
U2AF1Q01081 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.371e-8■■■■□ 21.5
U2AF1Q01081 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.565e-6■■■■□ 21.5
U2AF1Q01081 RBM4B-204ENST00000528106 324 ntTSL 513.69□□□□□ -0.225e-6■■■■□ 21.5
U2AF1Q01081 RBM4B-208ENST00000534198 431 ntTSL 311.61□□□□□ -0.555e-6■■■■□ 21.5
U2AF1Q01081 RBM4B-207ENST00000531969 769 ntTSL 3 BASIC11.47□□□□□ -0.575e-6■■■■□ 21.5
U2AF1Q01081 CNOT11-202ENST00000420107 552 ntTSL 27.67□□□□□ -1.181e-8■■■■□ 21.5
U2AF1Q01081 EIF4A1-216ENST00000580888 710 ntTSL 223.34■■□□□ 1.331e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-208ENST00000578476 573 ntTSL 222.23■■□□□ 1.151e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-214ENST00000580461 909 ntTSL 217.15■□□□□ 0.341e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-213ENST00000579139 568 ntTSL 415.89■□□□□ 0.131e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-226ENST00000582848 591 ntTSL 315.16■□□□□ 0.021e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-223ENST00000582169 552 ntTSL 414.39□□□□□ -0.111e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-229ENST00000583802 563 ntTSL 414.39□□□□□ -0.111e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-231ENST00000584054 716 ntTSL 213.31□□□□□ -0.281e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-215ENST00000580886 562 ntTSL 213.31□□□□□ -0.281e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-232ENST00000584712 782 ntTSL 212.78□□□□□ -0.361e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-212ENST00000579085 569 ntTSL 411.73□□□□□ -0.531e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-237ENST00000585024 577 ntTSL 411.44□□□□□ -0.581e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-230ENST00000583899 665 ntTSL 38.37□□□□□ -1.071e-10■■■■□ 21.4
U2AF1Q01081 EIF4A1-224ENST00000582213 560 ntTSL 45.09□□□□□ -1.591e-10■■■■□ 21.4
U2AF1Q01081 ELP2-221ENST00000542824 2288 ntTSL 1 (best) BASIC18.02■□□□□ 0.473e-7■■■■□ 21.4
U2AF1Q01081 ELP2-204ENST00000423854 2385 ntTSL 1 (best) BASIC15.08■□□□□ 03e-7■■■■□ 21.4
U2AF1Q01081 ELP2-201ENST00000350494 2487 ntTSL 2 BASIC15.06■□□□□ 03e-7■■■■□ 21.4
Retrieved 100 of 10,096 protein–RNA pairs in 53.3 ms