Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM4P50479 AC106739.1-201ENST00000617035 715 ntBASIC19.39■□□□□ 0.69
PDLIM4P50479 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM4P50479 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PDLIM4P50479 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
PDLIM4P50479 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
PDLIM4P50479 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM4P50479 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM4P50479 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
PDLIM4P50479 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
PDLIM4P50479 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.38■□□□□ 0.69
PDLIM4P50479 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
PDLIM4P50479 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
PDLIM4P50479 AC091060.1-201ENST00000623524 1766 ntBASIC19.38■□□□□ 0.69
PDLIM4P50479 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.37■□□□□ 0.69
PDLIM4P50479 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.37■□□□□ 0.69
PDLIM4P50479 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.37■□□□□ 0.69
PDLIM4P50479 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
PDLIM4P50479 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 AL136162.1-201ENST00000607711 1078 ntBASIC19.37■□□□□ 0.69
PDLIM4P50479 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
PDLIM4P50479 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.36■□□□□ 0.69
PDLIM4P50479 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
PDLIM4P50479 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
PDLIM4P50479 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.35■□□□□ 0.69
PDLIM4P50479 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM4P50479 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.35■□□□□ 0.69
PDLIM4P50479 AC142381.2-201ENST00000566120 298 ntBASIC19.35■□□□□ 0.69
PDLIM4P50479 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.35■□□□□ 0.69
PDLIM4P50479 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
PDLIM4P50479 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
PDLIM4P50479 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PDLIM4P50479 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.34■□□□□ 0.69
PDLIM4P50479 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.34■□□□□ 0.69
PDLIM4P50479 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PDLIM4P50479 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
PDLIM4P50479 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
PDLIM4P50479 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PDLIM4P50479 AC135279.3-201ENST00000610945 1311 ntBASIC19.33■□□□□ 0.69
PDLIM4P50479 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
PDLIM4P50479 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
PDLIM4P50479 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
PDLIM4P50479 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM4P50479 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.33■□□□□ 0.68
PDLIM4P50479 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM4P50479 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM4P50479 DUX4L19-201ENST00000557448 1267 ntBASIC19.33■□□□□ 0.68
PDLIM4P50479 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.33■□□□□ 0.68
PDLIM4P50479 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
PDLIM4P50479 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
PDLIM4P50479 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC19.32■□□□□ 0.68
PDLIM4P50479 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.32■□□□□ 0.68
PDLIM4P50479 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.32■□□□□ 0.68
PDLIM4P50479 AC092171.4-201ENST00000609130 632 ntBASIC19.32■□□□□ 0.68
PDLIM4P50479 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
PDLIM4P50479 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.32■□□□□ 0.68
PDLIM4P50479 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
PDLIM4P50479 AC131274.2-201ENST00000580697 1507 ntBASIC19.31■□□□□ 0.68
PDLIM4P50479 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.31■□□□□ 0.68
PDLIM4P50479 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.31■□□□□ 0.68
PDLIM4P50479 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.31■□□□□ 0.68
PDLIM4P50479 MIR6089-201ENST00000616698 64 ntBASIC19.31■□□□□ 0.68
PDLIM4P50479 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
PDLIM4P50479 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.3■□□□□ 0.68
PDLIM4P50479 AL022069.1-201ENST00000568025 1636 ntBASIC19.3■□□□□ 0.68
PDLIM4P50479 DUSP8P4-201ENST00000399538 1761 ntBASIC19.3■□□□□ 0.68
PDLIM4P50479 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
PDLIM4P50479 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
PDLIM4P50479 SLC6A10P-202ENST00000431994 2058 ntBASIC19.3■□□□□ 0.68
PDLIM4P50479 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.3■□□□□ 0.68
PDLIM4P50479 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.3■□□□□ 0.68
PDLIM4P50479 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
PDLIM4P50479 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms