Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
SOX2P48431 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SOX2P48431 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX2P48431 PKD1P6-201ENST00000343738 4769 ntBASIC20.05■□□□□ 0.8
SOX2P48431 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SOX2P48431 GPX1-201ENST00000419349 1106 ntBASIC20.05■□□□□ 0.8
SOX2P48431 HES4-202ENST00000428771 1040 ntTSL 2 BASIC20.05■□□□□ 0.8
SOX2P48431 HES4-204ENST00000484667 667 ntTSL 3 BASIC20.05■□□□□ 0.8
SOX2P48431 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SOX2P48431 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX2P48431 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SOX2P48431 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SOX2P48431 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SOX2P48431 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.05■□□□□ 0.8
SOX2P48431 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 ANOS2P-203ENST00000472227 1816 ntBASIC20.04■□□□□ 0.8
SOX2P48431 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC20.04■□□□□ 0.8
SOX2P48431 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
SOX2P48431 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SOX2P48431 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SOX2P48431 AC009831.1-201ENST00000580420 1582 ntBASIC20.04■□□□□ 0.8
SOX2P48431 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX2P48431 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
SOX2P48431 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX2P48431 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX2P48431 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
SOX2P48431 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.03■□□□□ 0.8
SOX2P48431 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.03■□□□□ 0.8
SOX2P48431 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SOX2P48431 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.03■□□□□ 0.8
SOX2P48431 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX2P48431 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX2P48431 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX2P48431 AC133552.2-201ENST00000619106 1032 ntBASIC20.02■□□□□ 0.8
SOX2P48431 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.02■□□□□ 0.8
SOX2P48431 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SOX2P48431 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
SOX2P48431 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC20.02■□□□□ 0.79
SOX2P48431 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
SOX2P48431 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC20.01■□□□□ 0.79
SOX2P48431 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
SOX2P48431 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.01■□□□□ 0.79
SOX2P48431 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
SOX2P48431 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
SOX2P48431 AL117328.2-201ENST00000624617 1940 ntBASIC20■□□□□ 0.79
SOX2P48431 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
SOX2P48431 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20■□□□□ 0.79
SOX2P48431 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20■□□□□ 0.79
SOX2P48431 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
SOX2P48431 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20■□□□□ 0.79
SOX2P48431 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20■□□□□ 0.79
SOX2P48431 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 AC090877.2-201ENST00000558441 1738 ntBASIC19.99■□□□□ 0.79
SOX2P48431 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 AC233723.2-201ENST00000623798 2106 ntBASIC19.99■□□□□ 0.79
SOX2P48431 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
SOX2P48431 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
SOX2P48431 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC19.99■□□□□ 0.79
SOX2P48431 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.98■□□□□ 0.79
SOX2P48431 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC19.98■□□□□ 0.79
SOX2P48431 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
SOX2P48431 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.98■□□□□ 0.79
SOX2P48431 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
SOX2P48431 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms