Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
CUX1P39880 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC39.03■■■■□ 3.84
CUX1P39880 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC39.03■■■■□ 3.84
CUX1P39880 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC39.03■■■■□ 3.84
CUX1P39880 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC39.02■■■■□ 3.84
CUX1P39880 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC39.02■■■■□ 3.84
CUX1P39880 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC39.02■■■■□ 3.84
CUX1P39880 IKBKGP1-201ENST00000612193 1073 ntBASIC39.02■■■■□ 3.84
CUX1P39880 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC39.02■■■■□ 3.84
CUX1P39880 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC39.02■■■■□ 3.84
CUX1P39880 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC39.01■■■■□ 3.84
CUX1P39880 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC39.01■■■■□ 3.84
CUX1P39880 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC39.01■■■■□ 3.84
CUX1P39880 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC39.01■■■■□ 3.84
CUX1P39880 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
CUX1P39880 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC39■■■■□ 3.83
CUX1P39880 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC39■■■■□ 3.83
CUX1P39880 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC39■■■■□ 3.83
CUX1P39880 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC39■■■■□ 3.83
CUX1P39880 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC38.99■■■■□ 3.83
CUX1P39880 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC38.99■■■■□ 3.83
CUX1P39880 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC38.99■■■■□ 3.83
CUX1P39880 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC38.99■■■■□ 3.83
CUX1P39880 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC38.98■■■■□ 3.83
CUX1P39880 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC38.98■■■■□ 3.83
CUX1P39880 AC090192.1-201ENST00000517740 490 ntBASIC38.98■■■■□ 3.83
CUX1P39880 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC38.98■■■■□ 3.83
CUX1P39880 MPST-208ENST00000628507 698 ntTSL 5 BASIC38.98■■■■□ 3.83
CUX1P39880 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC38.98■■■■□ 3.83
CUX1P39880 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC38.97■■■■□ 3.83
CUX1P39880 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC38.97■■■■□ 3.83
CUX1P39880 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC38.97■■■■□ 3.83
CUX1P39880 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC38.97■■■■□ 3.83
CUX1P39880 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC38.97■■■■□ 3.83
CUX1P39880 AC092437.1-201ENST00000624794 1048 ntBASIC38.97■■■■□ 3.83
CUX1P39880 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC38.97■■■■□ 3.83
CUX1P39880 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
CUX1P39880 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC38.96■■■■□ 3.83
CUX1P39880 BX842568.3-201ENST00000418104 571 ntBASIC38.96■■■■□ 3.83
CUX1P39880 KRT18P5-201ENST00000436075 1291 ntBASIC38.96■■■■□ 3.83
CUX1P39880 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC38.96■■■■□ 3.83
CUX1P39880 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC38.96■■■■□ 3.83
CUX1P39880 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC38.96■■■■□ 3.83
CUX1P39880 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC38.96■■■■□ 3.83
CUX1P39880 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC38.95■■■■□ 3.83
CUX1P39880 AC241377.3-202ENST00000626088 1088 ntBASIC38.95■■■■□ 3.83
CUX1P39880 AC241585.3-202ENST00000628937 1088 ntBASIC38.95■■■■□ 3.83
CUX1P39880 AC245100.8-202ENST00000629247 1058 ntBASIC38.95■■■■□ 3.83
CUX1P39880 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC38.94■■■■□ 3.82
CUX1P39880 AC233992.3-201ENST00000607491 485 ntBASIC38.94■■■■□ 3.82
CUX1P39880 RARRES2P11-201ENST00000635158 484 ntBASIC38.94■■■■□ 3.82
CUX1P39880 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC38.94■■■■□ 3.82
CUX1P39880 MIR3181-201ENST00000578512 73 ntBASIC38.94■■■■□ 3.82
CUX1P39880 AC092803.2-201ENST00000564287 1899 ntBASIC38.93■■■■□ 3.82
CUX1P39880 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC38.92■■■■□ 3.82
CUX1P39880 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC38.92■■■■□ 3.82
CUX1P39880 SLC6A10P-202ENST00000431994 2058 ntBASIC38.92■■■■□ 3.82
CUX1P39880 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC38.92■■■■□ 3.82
CUX1P39880 ASB1-202ENST00000409297 878 ntTSL 5 BASIC38.92■■■■□ 3.82
CUX1P39880 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC38.92■■■■□ 3.82
CUX1P39880 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CUX1P39880 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC38.91■■■■□ 3.82
CUX1P39880 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC38.91■■■■□ 3.82
CUX1P39880 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC38.91■■■■□ 3.82
CUX1P39880 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC38.9■■■■□ 3.82
CUX1P39880 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC38.9■■■■□ 3.82
CUX1P39880 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC38.9■■■■□ 3.82
CUX1P39880 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC38.9■■■■□ 3.82
CUX1P39880 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
CUX1P39880 AC009086.3-201ENST00000623486 1008 ntBASIC38.9■■■■□ 3.82
CUX1P39880 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC38.9■■■■□ 3.82
CUX1P39880 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
CUX1P39880 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC38.89■■■■□ 3.82
CUX1P39880 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC38.89■■■■□ 3.82
CUX1P39880 AK1-201ENST00000223836 736 ntTSL 3 BASIC38.89■■■■□ 3.82
CUX1P39880 AC034268.1-201ENST00000441047 882 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L2-201ENST00000561772 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L6-201ENST00000626483 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L1-201ENST00000627662 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L8-201ENST00000629013 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L3-201ENST00000630187 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L7-201ENST00000630678 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 DUX4L5-201ENST00000630834 1275 ntBASIC38.89■■■■□ 3.82
CUX1P39880 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC38.88■■■■□ 3.82
CUX1P39880 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC38.88■■■■□ 3.81
CUX1P39880 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC38.88■■■■□ 3.81
CUX1P39880 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC38.88■■■■□ 3.81
CUX1P39880 NKILA-201ENST00000613231 537 ntTSL 4 BASIC38.88■■■■□ 3.81
CUX1P39880 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC38.87■■■■□ 3.81
CUX1P39880 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC38.87■■■■□ 3.81
CUX1P39880 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC38.87■■■■□ 3.81
CUX1P39880 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
CUX1P39880 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC38.87■■■■□ 3.81
CUX1P39880 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC38.87■■■■□ 3.81
CUX1P39880 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC38.86■■■■□ 3.81
CUX1P39880 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CUX1P39880 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC38.86■■■■□ 3.81
CUX1P39880 RRP9-201ENST00000232888 1578 ntAPPRIS P1 TSL 1 (best) BASIC38.86■■■■□ 3.81
CUX1P39880 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC38.85■■■■□ 3.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms