Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
MSX2P35548 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
MSX2P35548 METRNL-202ENST00000570778 967 ntTSL 5 BASIC21.81■■□□□ 1.08
MSX2P35548 DUSP8P3-201ENST00000399571 1760 ntBASIC21.81■■□□□ 1.08
MSX2P35548 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
MSX2P35548 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
MSX2P35548 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.81■■□□□ 1.08
MSX2P35548 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
MSX2P35548 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.8■■□□□ 1.08
MSX2P35548 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
MSX2P35548 GUSBP5-202ENST00000510805 1989 ntBASIC21.8■■□□□ 1.08
MSX2P35548 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC21.8■■□□□ 1.08
MSX2P35548 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 AC007375.3-201ENST00000600936 2314 ntBASIC21.8■■□□□ 1.08
MSX2P35548 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.8■■□□□ 1.08
MSX2P35548 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
MSX2P35548 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.8■■□□□ 1.08
MSX2P35548 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.8■■□□□ 1.08
MSX2P35548 LINC00526-201ENST00000581067 1875 ntBASIC21.79■■□□□ 1.08
MSX2P35548 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.79■■□□□ 1.08
MSX2P35548 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSX2P35548 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSX2P35548 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.79■■□□□ 1.08
MSX2P35548 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.79■■□□□ 1.08
MSX2P35548 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
MSX2P35548 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
MSX2P35548 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
MSX2P35548 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
MSX2P35548 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.78■■□□□ 1.08
MSX2P35548 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
MSX2P35548 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC21.78■■□□□ 1.08
MSX2P35548 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.78■■□□□ 1.08
MSX2P35548 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.78■■□□□ 1.08
MSX2P35548 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSX2P35548 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
MSX2P35548 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSX2P35548 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
MSX2P35548 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSX2P35548 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSX2P35548 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC21.77■■□□□ 1.08
MSX2P35548 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSX2P35548 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
MSX2P35548 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
MSX2P35548 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
MSX2P35548 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSX2P35548 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSX2P35548 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSX2P35548 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSX2P35548 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.76■■□□□ 1.07
MSX2P35548 AC092068.2-201ENST00000590491 1708 ntBASIC21.75■■□□□ 1.07
MSX2P35548 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.75■■□□□ 1.07
MSX2P35548 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSX2P35548 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSX2P35548 AC060814.1-201ENST00000554326 538 ntBASIC21.75■■□□□ 1.07
MSX2P35548 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
MSX2P35548 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21.75■■□□□ 1.07
MSX2P35548 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
MSX2P35548 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
MSX2P35548 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.75■■□□□ 1.07
MSX2P35548 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.74■■□□□ 1.07
MSX2P35548 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC21.74■■□□□ 1.07
MSX2P35548 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
MSX2P35548 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
MSX2P35548 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 MIR3648-2-201ENST00000581792 180 ntBASIC21.73■■□□□ 1.07
MSX2P35548 MIR3648-1-201ENST00000615959 180 ntBASIC21.73■■□□□ 1.07
MSX2P35548 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
MSX2P35548 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
MSX2P35548 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms