Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC25.97■■□□□ 1.75
CIITAP33076 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CIITAP33076 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC25.96■■□□□ 1.75
CIITAP33076 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.96■■□□□ 1.75
CIITAP33076 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
CIITAP33076 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CIITAP33076 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CIITAP33076 AC131212.1-201ENST00000613771 668 ntBASIC25.96■■□□□ 1.75
CIITAP33076 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CIITAP33076 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.75
CIITAP33076 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.95■■□□□ 1.75
CIITAP33076 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
CIITAP33076 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CIITAP33076 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
CIITAP33076 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.95■■□□□ 1.74
CIITAP33076 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
CIITAP33076 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC25.94■■□□□ 1.74
CIITAP33076 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC25.94■■□□□ 1.74
CIITAP33076 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.94■■□□□ 1.74
CIITAP33076 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CIITAP33076 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
CIITAP33076 AC005703.6-201ENST00000623265 1329 ntBASIC25.93■■□□□ 1.74
CIITAP33076 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CIITAP33076 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CIITAP33076 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC25.93■■□□□ 1.74
CIITAP33076 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.93■■□□□ 1.74
CIITAP33076 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.93■■□□□ 1.74
CIITAP33076 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
CIITAP33076 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC25.93■■□□□ 1.74
CIITAP33076 PREB-202ENST00000406567 1910 ntTSL 5 BASIC25.92■■□□□ 1.74
CIITAP33076 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC25.92■■□□□ 1.74
CIITAP33076 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC25.92■■□□□ 1.74
CIITAP33076 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.92■■□□□ 1.74
CIITAP33076 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.92■■□□□ 1.74
CIITAP33076 ALDH1A3-203ENST00000557963 1670 ntBASIC25.92■■□□□ 1.74
CIITAP33076 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
CIITAP33076 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC25.92■■□□□ 1.74
CIITAP33076 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
CIITAP33076 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
CIITAP33076 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.91■■□□□ 1.74
CIITAP33076 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.91■■□□□ 1.74
CIITAP33076 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.9■■□□□ 1.74
CIITAP33076 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CIITAP33076 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CIITAP33076 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
CIITAP33076 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
CIITAP33076 EI24-204ENST00000527235 1625 ntTSL 5 BASIC25.9■■□□□ 1.74
CIITAP33076 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
CIITAP33076 AL356740.2-201ENST00000601559 647 ntBASIC25.9■■□□□ 1.74
CIITAP33076 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.9■■□□□ 1.74
CIITAP33076 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC25.9■■□□□ 1.74
CIITAP33076 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC25.9■■□□□ 1.74
CIITAP33076 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CIITAP33076 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.89■■□□□ 1.74
CIITAP33076 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
CIITAP33076 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC25.89■■□□□ 1.73
CIITAP33076 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.89■■□□□ 1.73
CIITAP33076 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
CIITAP33076 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
CIITAP33076 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC25.88■■□□□ 1.73
CIITAP33076 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
CIITAP33076 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC25.88■■□□□ 1.73
CIITAP33076 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC25.88■■□□□ 1.73
CIITAP33076 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC25.87■■□□□ 1.73
CIITAP33076 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.87■■□□□ 1.73
CIITAP33076 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.87■■□□□ 1.73
CIITAP33076 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC25.87■■□□□ 1.73
CIITAP33076 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
CIITAP33076 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.86■■□□□ 1.73
CIITAP33076 EI24-213ENST00000618552 1747 ntTSL 5 BASIC25.86■■□□□ 1.73
CIITAP33076 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
CIITAP33076 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.86■■□□□ 1.73
CIITAP33076 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.86■■□□□ 1.73
CIITAP33076 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC25.86■■□□□ 1.73
CIITAP33076 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
CIITAP33076 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.86■■□□□ 1.73
CIITAP33076 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC25.86■■□□□ 1.73
CIITAP33076 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC25.86■■□□□ 1.73
CIITAP33076 SHD-204ENST00000599689 1729 ntTSL 5 BASIC25.85■■□□□ 1.73
CIITAP33076 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CIITAP33076 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.85■■□□□ 1.73
CIITAP33076 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.85■■□□□ 1.73
CIITAP33076 SRR-208ENST00000576848 588 ntTSL 4 BASIC25.85■■□□□ 1.73
CIITAP33076 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC25.85■■□□□ 1.73
CIITAP33076 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
CIITAP33076 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
CIITAP33076 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.85■■□□□ 1.73
CIITAP33076 AC004812.2-201ENST00000611079 2094 ntBASIC25.84■■□□□ 1.73
CIITAP33076 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
CIITAP33076 AL512631.2-201ENST00000604634 923 ntBASIC25.84■■□□□ 1.73
CIITAP33076 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC25.84■■□□□ 1.73
CIITAP33076 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC25.84■■□□□ 1.73
CIITAP33076 RASSF1-AS1-201ENST00000629828 790 ntBASIC25.84■■□□□ 1.73
CIITAP33076 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
CIITAP33076 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
CIITAP33076 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
CIITAP33076 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
CIITAP33076 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
CIITAP33076 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
CIITAP33076 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms