Protein–RNA interactions for Protein: P0CW20

LIMS4, LIM and senescent cell antigen-like-containing domain protein 4, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4P0CW20 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMS4P0CW20 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMS4P0CW20 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMS4P0CW20 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIMS4P0CW20 AC007029.1-201ENST00000604183 313 ntBASIC20.39■□□□□ 0.85
LIMS4P0CW20 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
LIMS4P0CW20 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS4P0CW20 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS4P0CW20 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS4P0CW20 LINC00526-201ENST00000581067 1875 ntBASIC20.37■□□□□ 0.85
LIMS4P0CW20 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS4P0CW20 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
LIMS4P0CW20 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMS4P0CW20 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.37■□□□□ 0.85
LIMS4P0CW20 AC026202.3-201ENST00000600805 1127 ntBASIC20.37■□□□□ 0.85
LIMS4P0CW20 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS4P0CW20 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS4P0CW20 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
LIMS4P0CW20 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
LIMS4P0CW20 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 GUSBP5-202ENST00000510805 1989 ntBASIC20.36■□□□□ 0.85
LIMS4P0CW20 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
LIMS4P0CW20 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS4P0CW20 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.35■□□□□ 0.85
LIMS4P0CW20 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS4P0CW20 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.34■□□□□ 0.85
LIMS4P0CW20 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMS4P0CW20 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMS4P0CW20 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LIMS4P0CW20 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS4P0CW20 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS4P0CW20 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMS4P0CW20 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS4P0CW20 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS4P0CW20 AL161729.1-201ENST00000604104 1402 ntBASIC20.33■□□□□ 0.84
LIMS4P0CW20 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMS4P0CW20 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMS4P0CW20 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.33■□□□□ 0.84
LIMS4P0CW20 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 AC022413.1-201ENST00000624602 984 ntBASIC20.32■□□□□ 0.84
LIMS4P0CW20 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIMS4P0CW20 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS4P0CW20 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS4P0CW20 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LIMS4P0CW20 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS4P0CW20 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS4P0CW20 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LIMS4P0CW20 AC090877.2-201ENST00000558441 1738 ntBASIC20.31■□□□□ 0.84
LIMS4P0CW20 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMS4P0CW20 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LIMS4P0CW20 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
LIMS4P0CW20 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS4P0CW20 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms