Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMS3P0CW19 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIMS3P0CW19 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIMS3P0CW19 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIMS3P0CW19 AC007029.1-201ENST00000604183 313 ntBASIC20.39■□□□□ 0.85
LIMS3P0CW19 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
LIMS3P0CW19 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS3P0CW19 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS3P0CW19 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIMS3P0CW19 LINC00526-201ENST00000581067 1875 ntBASIC20.37■□□□□ 0.85
LIMS3P0CW19 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS3P0CW19 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC20.37■□□□□ 0.85
LIMS3P0CW19 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIMS3P0CW19 GFER-205ENST00000569451 517 ntTSL 5 BASIC20.37■□□□□ 0.85
LIMS3P0CW19 AC026202.3-201ENST00000600805 1127 ntBASIC20.37■□□□□ 0.85
LIMS3P0CW19 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS3P0CW19 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIMS3P0CW19 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.36■□□□□ 0.85
LIMS3P0CW19 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.36■□□□□ 0.85
LIMS3P0CW19 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 GUSBP5-202ENST00000510805 1989 ntBASIC20.36■□□□□ 0.85
LIMS3P0CW19 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
LIMS3P0CW19 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIMS3P0CW19 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.35■□□□□ 0.85
LIMS3P0CW19 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIMS3P0CW19 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.34■□□□□ 0.85
LIMS3P0CW19 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMS3P0CW19 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.34■□□□□ 0.85
LIMS3P0CW19 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
LIMS3P0CW19 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIMS3P0CW19 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS3P0CW19 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.33■□□□□ 0.85
LIMS3P0CW19 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS3P0CW19 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
LIMS3P0CW19 AL161729.1-201ENST00000604104 1402 ntBASIC20.33■□□□□ 0.84
LIMS3P0CW19 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMS3P0CW19 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
LIMS3P0CW19 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC20.33■□□□□ 0.84
LIMS3P0CW19 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 AC022413.1-201ENST00000624602 984 ntBASIC20.32■□□□□ 0.84
LIMS3P0CW19 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
LIMS3P0CW19 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 NAT14-201ENST00000205194 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
LIMS3P0CW19 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS3P0CW19 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
LIMS3P0CW19 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS3P0CW19 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS3P0CW19 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
LIMS3P0CW19 AC090877.2-201ENST00000558441 1738 ntBASIC20.31■□□□□ 0.84
LIMS3P0CW19 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.31■□□□□ 0.84
LIMS3P0CW19 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
LIMS3P0CW19 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
LIMS3P0CW19 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
LIMS3P0CW19 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms