Protein–RNA interactions for Protein: P04049

RAF1, RAF proto-oncogene serine/threonine-protein kinase, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAF1P04049 TSPY11P-201ENST00000442607 1045 ntBASIC20.61■□□□□ 0.89
RAF1P04049 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.61■□□□□ 0.89
RAF1P04049 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAF1P04049 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
RAF1P04049 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAF1P04049 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
RAF1P04049 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RAF1P04049 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.6■□□□□ 0.89
RAF1P04049 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC20.6■□□□□ 0.89
RAF1P04049 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RAF1P04049 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.6■□□□□ 0.89
RAF1P04049 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC20.6■□□□□ 0.89
RAF1P04049 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.6■□□□□ 0.89
RAF1P04049 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
RAF1P04049 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RAF1P04049 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
RAF1P04049 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.6■□□□□ 0.89
RAF1P04049 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC20.6■□□□□ 0.89
RAF1P04049 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC20.59■□□□□ 0.89
RAF1P04049 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 AL139246.5-201ENST00000606645 996 ntBASIC20.59■□□□□ 0.89
RAF1P04049 AC137630.3-201ENST00000607245 391 ntBASIC20.59■□□□□ 0.89
RAF1P04049 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RAF1P04049 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.59■□□□□ 0.89
RAF1P04049 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAF1P04049 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RAF1P04049 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAF1P04049 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
RAF1P04049 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RAF1P04049 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RAF1P04049 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
RAF1P04049 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RAF1P04049 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC20.58■□□□□ 0.88
RAF1P04049 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RAF1P04049 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
RAF1P04049 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.57■□□□□ 0.88
RAF1P04049 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC20.57■□□□□ 0.88
RAF1P04049 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.57■□□□□ 0.88
RAF1P04049 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RAF1P04049 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.56■□□□□ 0.88
RAF1P04049 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RAF1P04049 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.55■□□□□ 0.88
RAF1P04049 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC20.55■□□□□ 0.88
RAF1P04049 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.55■□□□□ 0.88
RAF1P04049 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.55■□□□□ 0.88
RAF1P04049 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC20.55■□□□□ 0.88
RAF1P04049 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.55■□□□□ 0.88
RAF1P04049 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
RAF1P04049 AC021242.3-201ENST00000607598 1377 ntBASIC20.55■□□□□ 0.88
RAF1P04049 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.55■□□□□ 0.88
RAF1P04049 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RAF1P04049 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAF1P04049 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.54■□□□□ 0.88
RAF1P04049 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.54■□□□□ 0.88
RAF1P04049 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.54■□□□□ 0.88
RAF1P04049 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.54■□□□□ 0.88
RAF1P04049 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.54■□□□□ 0.88
RAF1P04049 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RAF1P04049 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RAF1P04049 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 MIR6089-201ENST00000616698 64 ntBASIC20.53■□□□□ 0.88
RAF1P04049 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RAF1P04049 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
RAF1P04049 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms