Protein–RNA interactions for Protein: O95716

RAB3D, Ras-related protein Rab-3D, humanhuman

Predictions only

Length 219 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAB3DO95716 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
RAB3DO95716 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
RAB3DO95716 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAB3DO95716 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RAB3DO95716 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB3DO95716 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAB3DO95716 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
RAB3DO95716 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
RAB3DO95716 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
RAB3DO95716 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.4■□□□□ 0.7
RAB3DO95716 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
RAB3DO95716 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
RAB3DO95716 FOXO3B-201ENST00000395675 1928 ntBASIC19.39■□□□□ 0.7
RAB3DO95716 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
RAB3DO95716 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.39■□□□□ 0.69
RAB3DO95716 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RAB3DO95716 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC19.39■□□□□ 0.69
RAB3DO95716 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
RAB3DO95716 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
RAB3DO95716 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
RAB3DO95716 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 AC025884.2-201ENST00000553429 711 ntBASIC19.38■□□□□ 0.69
RAB3DO95716 AC137767.1-201ENST00000602918 1920 ntBASIC19.38■□□□□ 0.69
RAB3DO95716 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
RAB3DO95716 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.37■□□□□ 0.69
RAB3DO95716 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
RAB3DO95716 ECEL1P1-201ENST00000373592 1742 ntBASIC19.37■□□□□ 0.69
RAB3DO95716 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.36■□□□□ 0.69
RAB3DO95716 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.36■□□□□ 0.69
RAB3DO95716 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
RAB3DO95716 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.36■□□□□ 0.69
RAB3DO95716 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
RAB3DO95716 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC19.36■□□□□ 0.69
RAB3DO95716 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
RAB3DO95716 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
RAB3DO95716 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
RAB3DO95716 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC19.35■□□□□ 0.69
RAB3DO95716 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
RAB3DO95716 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.35■□□□□ 0.69
RAB3DO95716 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
RAB3DO95716 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
RAB3DO95716 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.34■□□□□ 0.69
RAB3DO95716 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
RAB3DO95716 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.34■□□□□ 0.69
RAB3DO95716 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.34■□□□□ 0.69
RAB3DO95716 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.34■□□□□ 0.69
RAB3DO95716 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
RAB3DO95716 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
RAB3DO95716 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
RAB3DO95716 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RAB3DO95716 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
RAB3DO95716 AL157400.5-201ENST00000507624 621 ntBASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 2920.4 ms