Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.88■■□□□ 1.09
SEMA3DO95025 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEMA3DO95025 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEMA3DO95025 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEMA3DO95025 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
SEMA3DO95025 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
SEMA3DO95025 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.88■■□□□ 1.09
SEMA3DO95025 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SEMA3DO95025 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SEMA3DO95025 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SEMA3DO95025 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.87■■□□□ 1.09
SEMA3DO95025 AL031848.2-201ENST00000607670 837 ntBASIC21.87■■□□□ 1.09
SEMA3DO95025 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
SEMA3DO95025 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SEMA3DO95025 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
SEMA3DO95025 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.86■■□□□ 1.09
SEMA3DO95025 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.86■■□□□ 1.09
SEMA3DO95025 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
SEMA3DO95025 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.86■■□□□ 1.09
SEMA3DO95025 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.86■■□□□ 1.09
SEMA3DO95025 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.86■■□□□ 1.09
SEMA3DO95025 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.86■■□□□ 1.09
SEMA3DO95025 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
SEMA3DO95025 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.85■■□□□ 1.09
SEMA3DO95025 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.85■■□□□ 1.09
SEMA3DO95025 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.85■■□□□ 1.09
SEMA3DO95025 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SEMA3DO95025 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.84■■□□□ 1.09
SEMA3DO95025 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SEMA3DO95025 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SEMA3DO95025 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SEMA3DO95025 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
SEMA3DO95025 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SEMA3DO95025 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.83■■□□□ 1.09
SEMA3DO95025 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.83■■□□□ 1.09
SEMA3DO95025 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.83■■□□□ 1.09
SEMA3DO95025 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SEMA3DO95025 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SEMA3DO95025 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
SEMA3DO95025 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
SEMA3DO95025 AC137630.3-201ENST00000607245 391 ntBASIC21.82■■□□□ 1.08
SEMA3DO95025 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
SEMA3DO95025 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.82■■□□□ 1.08
SEMA3DO95025 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
SEMA3DO95025 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 AC004448.1-201ENST00000458332 883 ntBASIC21.81■■□□□ 1.08
SEMA3DO95025 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 ALDH1A3-203ENST00000557963 1670 ntBASIC21.81■■□□□ 1.08
SEMA3DO95025 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SEMA3DO95025 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
SEMA3DO95025 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SEMA3DO95025 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SEMA3DO95025 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SEMA3DO95025 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SEMA3DO95025 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SEMA3DO95025 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SEMA3DO95025 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SEMA3DO95025 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
SEMA3DO95025 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
SEMA3DO95025 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SEMA3DO95025 AC133561.1-201ENST00000568600 2415 ntBASIC21.8■■□□□ 1.08
SEMA3DO95025 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SEMA3DO95025 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.79■■□□□ 1.08
SEMA3DO95025 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.79■■□□□ 1.08
SEMA3DO95025 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SEMA3DO95025 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SEMA3DO95025 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
SEMA3DO95025 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.79■■□□□ 1.08
SEMA3DO95025 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.79■■□□□ 1.08
SEMA3DO95025 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.79■■□□□ 1.08
SEMA3DO95025 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.79■■□□□ 1.08
SEMA3DO95025 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SEMA3DO95025 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SEMA3DO95025 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SEMA3DO95025 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.78■■□□□ 1.08
SEMA3DO95025 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.78■■□□□ 1.08
SEMA3DO95025 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SEMA3DO95025 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SEMA3DO95025 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.78■■□□□ 1.08
SEMA3DO95025 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
SEMA3DO95025 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.4 ms