Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CACNA1FO60840 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC29.21■■■□□ 2.27
CACNA1FO60840 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC29.21■■■□□ 2.27
CACNA1FO60840 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
CACNA1FO60840 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC29.2■■■□□ 2.27
CACNA1FO60840 AL139125.2-201ENST00000623134 1869 ntBASIC29.2■■■□□ 2.27
CACNA1FO60840 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
CACNA1FO60840 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC29.2■■■□□ 2.26
CACNA1FO60840 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.26
CACNA1FO60840 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC29.19■■■□□ 2.26
CACNA1FO60840 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CACNA1FO60840 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CACNA1FO60840 MIR4466-201ENST00000606121 54 ntBASIC29.19■■■□□ 2.26
CACNA1FO60840 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC29.19■■■□□ 2.26
CACNA1FO60840 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CACNA1FO60840 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
CACNA1FO60840 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC29.19■■■□□ 2.26
CACNA1FO60840 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CACNA1FO60840 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
CACNA1FO60840 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
CACNA1FO60840 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC29.18■■■□□ 2.26
CACNA1FO60840 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC29.18■■■□□ 2.26
CACNA1FO60840 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CACNA1FO60840 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CACNA1FO60840 SHD-204ENST00000599689 1729 ntTSL 5 BASIC29.17■■■□□ 2.26
CACNA1FO60840 EI24-213ENST00000618552 1747 ntTSL 5 BASIC29.17■■■□□ 2.26
CACNA1FO60840 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CACNA1FO60840 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CACNA1FO60840 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC29.17■■■□□ 2.26
CACNA1FO60840 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CACNA1FO60840 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
CACNA1FO60840 LINC01124-201ENST00000409786 2117 ntBASIC29.17■■■□□ 2.26
CACNA1FO60840 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC29.17■■■□□ 2.26
CACNA1FO60840 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CACNA1FO60840 AK3-203ENST00000447596 705 ntTSL 2 BASIC29.17■■■□□ 2.26
CACNA1FO60840 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
CACNA1FO60840 RASSF1-AS1-201ENST00000629828 790 ntBASIC29.17■■■□□ 2.26
CACNA1FO60840 USF2-207ENST00000595068 1612 ntTSL 5 BASIC29.17■■■□□ 2.26
CACNA1FO60840 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.26
CACNA1FO60840 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC29.16■■■□□ 2.26
CACNA1FO60840 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC29.16■■■□□ 2.26
CACNA1FO60840 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CACNA1FO60840 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CACNA1FO60840 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
CACNA1FO60840 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC29.15■■■□□ 2.26
CACNA1FO60840 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
CACNA1FO60840 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC29.15■■■□□ 2.26
CACNA1FO60840 AL356740.2-201ENST00000601559 647 ntBASIC29.15■■■□□ 2.26
CACNA1FO60840 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
CACNA1FO60840 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
CACNA1FO60840 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
CACNA1FO60840 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CACNA1FO60840 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CACNA1FO60840 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
CACNA1FO60840 TMEM202-AS1-202ENST00000565181 2325 ntBASIC29.14■■■□□ 2.25
CACNA1FO60840 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
CACNA1FO60840 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC29.14■■■□□ 2.25
CACNA1FO60840 TRIR-202ENST00000588213 841 ntTSL 3 BASIC29.13■■■□□ 2.25
CACNA1FO60840 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC29.13■■■□□ 2.25
CACNA1FO60840 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
CACNA1FO60840 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
CACNA1FO60840 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CACNA1FO60840 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC29.12■■■□□ 2.25
CACNA1FO60840 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC29.12■■■□□ 2.25
CACNA1FO60840 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CACNA1FO60840 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
CACNA1FO60840 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
CACNA1FO60840 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC29.11■■■□□ 2.25
CACNA1FO60840 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC29.11■■■□□ 2.25
CACNA1FO60840 REST-206ENST00000612429 1376 ntTSL 5 BASIC29.11■■■□□ 2.25
CACNA1FO60840 REST-207ENST00000616975 1370 ntTSL 5 BASIC29.11■■■□□ 2.25
CACNA1FO60840 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC29.1■■■□□ 2.25
CACNA1FO60840 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
CACNA1FO60840 ALDH1A3-203ENST00000557963 1670 ntBASIC29.1■■■□□ 2.25
CACNA1FO60840 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
CACNA1FO60840 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC29.09■■■□□ 2.25
CACNA1FO60840 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CACNA1FO60840 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CACNA1FO60840 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC29.08■■■□□ 2.25
CACNA1FO60840 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC29.08■■■□□ 2.25
CACNA1FO60840 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC29.08■■■□□ 2.25
CACNA1FO60840 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CACNA1FO60840 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC29.08■■■□□ 2.25
CACNA1FO60840 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CACNA1FO60840 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
CACNA1FO60840 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
CACNA1FO60840 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
CACNA1FO60840 C17orf82-201ENST00000623772 1530 ntBASIC29.07■■■□□ 2.24
CACNA1FO60840 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.07■■■□□ 2.24
CACNA1FO60840 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC29.07■■■□□ 2.24
CACNA1FO60840 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
CACNA1FO60840 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC29.07■■■□□ 2.24
CACNA1FO60840 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
CACNA1FO60840 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC29.07■■■□□ 2.24
CACNA1FO60840 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC29.07■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms