Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 ZNRF2P2-203ENST00000454624 420 ntBASIC19.59■□□□□ 0.73
XRCC3O43542 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
XRCC3O43542 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
XRCC3O43542 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
XRCC3O43542 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC19.58■□□□□ 0.73
XRCC3O43542 LSR-203ENST00000360798 1963 ntTSL 2 BASIC19.58■□□□□ 0.73
XRCC3O43542 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC19.58■□□□□ 0.72
XRCC3O43542 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
XRCC3O43542 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC19.58■□□□□ 0.72
XRCC3O43542 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
XRCC3O43542 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC19.58■□□□□ 0.72
XRCC3O43542 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC19.57■□□□□ 0.72
XRCC3O43542 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.57■□□□□ 0.72
XRCC3O43542 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.57■□□□□ 0.72
XRCC3O43542 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.57■□□□□ 0.72
XRCC3O43542 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.57■□□□□ 0.72
XRCC3O43542 AC060814.1-201ENST00000554326 538 ntBASIC19.57■□□□□ 0.72
XRCC3O43542 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.57■□□□□ 0.72
XRCC3O43542 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
XRCC3O43542 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.57■□□□□ 0.72
XRCC3O43542 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
XRCC3O43542 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
XRCC3O43542 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
XRCC3O43542 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.56■□□□□ 0.72
XRCC3O43542 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
XRCC3O43542 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.56■□□□□ 0.72
XRCC3O43542 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.56■□□□□ 0.72
XRCC3O43542 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 RP9P-202ENST00000450133 1212 ntBASIC19.56■□□□□ 0.72
XRCC3O43542 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC19.56■□□□□ 0.72
XRCC3O43542 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
XRCC3O43542 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
XRCC3O43542 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.55■□□□□ 0.72
XRCC3O43542 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
XRCC3O43542 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.55■□□□□ 0.72
XRCC3O43542 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 RPS2P35-201ENST00000443417 897 ntBASIC19.55■□□□□ 0.72
XRCC3O43542 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
XRCC3O43542 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC19.55■□□□□ 0.72
XRCC3O43542 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 AL161729.1-201ENST00000604104 1402 ntBASIC19.54■□□□□ 0.72
XRCC3O43542 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.54■□□□□ 0.72
XRCC3O43542 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
XRCC3O43542 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
XRCC3O43542 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC19.53■□□□□ 0.72
XRCC3O43542 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
XRCC3O43542 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC19.53■□□□□ 0.72
XRCC3O43542 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.53■□□□□ 0.72
XRCC3O43542 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.53■□□□□ 0.72
XRCC3O43542 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
XRCC3O43542 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
XRCC3O43542 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
XRCC3O43542 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
XRCC3O43542 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.52■□□□□ 0.72
XRCC3O43542 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
XRCC3O43542 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
XRCC3O43542 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
XRCC3O43542 AC092296.2-201ENST00000589470 999 ntBASIC19.52■□□□□ 0.72
XRCC3O43542 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
XRCC3O43542 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
XRCC3O43542 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
XRCC3O43542 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
XRCC3O43542 MIR3648-2-201ENST00000581792 180 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms