Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.69■■□□□ 1.06
PROM1O43490 ABCB10P4-201ENST00000566803 2184 ntBASIC21.69■■□□□ 1.06
PROM1O43490 AC021242.3-201ENST00000607598 1377 ntBASIC21.69■■□□□ 1.06
PROM1O43490 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
PROM1O43490 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PROM1O43490 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PROM1O43490 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PROM1O43490 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
PROM1O43490 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
PROM1O43490 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
PROM1O43490 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.68■■□□□ 1.06
PROM1O43490 AC004448.1-201ENST00000458332 883 ntBASIC21.68■■□□□ 1.06
PROM1O43490 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC21.68■■□□□ 1.06
PROM1O43490 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
PROM1O43490 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.68■■□□□ 1.06
PROM1O43490 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
PROM1O43490 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
PROM1O43490 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
PROM1O43490 AC009299.2-201ENST00000482477 511 ntBASIC21.67■■□□□ 1.06
PROM1O43490 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.67■■□□□ 1.06
PROM1O43490 Z92544.1-202ENST00000571933 1220 ntBASIC21.67■■□□□ 1.06
PROM1O43490 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.67■■□□□ 1.06
PROM1O43490 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PROM1O43490 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PROM1O43490 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
PROM1O43490 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.66■■□□□ 1.06
PROM1O43490 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.66■■□□□ 1.06
PROM1O43490 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.66■■□□□ 1.06
PROM1O43490 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.66■■□□□ 1.06
PROM1O43490 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PROM1O43490 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
PROM1O43490 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC21.66■■□□□ 1.06
PROM1O43490 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.66■■□□□ 1.06
PROM1O43490 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
PROM1O43490 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
PROM1O43490 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.65■■□□□ 1.06
PROM1O43490 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
PROM1O43490 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.64■■□□□ 1.06
PROM1O43490 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PROM1O43490 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
PROM1O43490 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
PROM1O43490 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.64■■□□□ 1.05
PROM1O43490 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
PROM1O43490 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
PROM1O43490 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.63■■□□□ 1.05
PROM1O43490 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.63■■□□□ 1.05
PROM1O43490 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.63■■□□□ 1.05
PROM1O43490 SNX5-217ENST00000606557 1087 ntBASIC21.63■■□□□ 1.05
PROM1O43490 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
PROM1O43490 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
PROM1O43490 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.63■■□□□ 1.05
PROM1O43490 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.62■■□□□ 1.05
PROM1O43490 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.62■■□□□ 1.05
PROM1O43490 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
PROM1O43490 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.62■■□□□ 1.05
PROM1O43490 AC239859.2-201ENST00000444165 318 ntBASIC21.62■■□□□ 1.05
PROM1O43490 KRT125P-201ENST00000546827 989 ntBASIC21.62■■□□□ 1.05
PROM1O43490 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.62■■□□□ 1.05
PROM1O43490 AL035685.1-201ENST00000636663 812 ntBASIC21.62■■□□□ 1.05
PROM1O43490 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PROM1O43490 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
PROM1O43490 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PROM1O43490 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PROM1O43490 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
PROM1O43490 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
PROM1O43490 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.61■■□□□ 1.05
PROM1O43490 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.61■■□□□ 1.05
PROM1O43490 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
PROM1O43490 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PROM1O43490 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
PROM1O43490 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
PROM1O43490 ALDH1A3-203ENST00000557963 1670 ntBASIC21.6■■□□□ 1.05
PROM1O43490 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
PROM1O43490 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms