Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HOXA3O43365 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXA3O43365 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.38■□□□□ 0.53
HOXA3O43365 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HOXA3O43365 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HOXA3O43365 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HOXA3O43365 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
HOXA3O43365 SUDS3P1-201ENST00000505831 966 ntBASIC18.38■□□□□ 0.53
HOXA3O43365 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXA3O43365 AC145676.1-201ENST00000514988 2004 ntBASIC18.38■□□□□ 0.53
HOXA3O43365 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXA3O43365 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HOXA3O43365 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC18.38■□□□□ 0.53
HOXA3O43365 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC18.37■□□□□ 0.53
HOXA3O43365 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 AC092171.4-201ENST00000609130 632 ntBASIC18.37■□□□□ 0.53
HOXA3O43365 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.37■□□□□ 0.53
HOXA3O43365 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 SYT6-210ENST00000641643 1587 ntBASIC18.37■□□□□ 0.53
HOXA3O43365 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.37■□□□□ 0.53
HOXA3O43365 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
HOXA3O43365 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HOXA3O43365 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXA3O43365 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
HOXA3O43365 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
HOXA3O43365 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
HOXA3O43365 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.36■□□□□ 0.53
HOXA3O43365 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXA3O43365 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
HOXA3O43365 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC18.36■□□□□ 0.53
HOXA3O43365 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.36■□□□□ 0.53
HOXA3O43365 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.35■□□□□ 0.53
HOXA3O43365 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC18.35■□□□□ 0.53
HOXA3O43365 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.35■□□□□ 0.53
HOXA3O43365 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
HOXA3O43365 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HOXA3O43365 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HOXA3O43365 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA3O43365 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA3O43365 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXA3O43365 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA3O43365 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC18.34■□□□□ 0.53
HOXA3O43365 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC18.34■□□□□ 0.53
HOXA3O43365 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXA3O43365 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.34■□□□□ 0.53
HOXA3O43365 SF1-220ENST00000626028 704 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA3O43365 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HOXA3O43365 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA3O43365 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA3O43365 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HOXA3O43365 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HOXA3O43365 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA3O43365 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC18.34■□□□□ 0.53
HOXA3O43365 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA3O43365 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.33■□□□□ 0.53
HOXA3O43365 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.33■□□□□ 0.53
HOXA3O43365 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA3O43365 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.33■□□□□ 0.53
HOXA3O43365 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
HOXA3O43365 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA3O43365 LGR4-203ENST00000480977 492 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA3O43365 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA3O43365 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
HOXA3O43365 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.33■□□□□ 0.52
HOXA3O43365 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HOXA3O43365 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.33■□□□□ 0.52
HOXA3O43365 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA3O43365 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA3O43365 AF213884.3-201ENST00000563833 479 ntBASIC18.32■□□□□ 0.52
HOXA3O43365 AC099791.2-201ENST00000605725 427 ntBASIC18.32■□□□□ 0.52
HOXA3O43365 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HOXA3O43365 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXA3O43365 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HOXA3O43365 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
HOXA3O43365 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
HOXA3O43365 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXA3O43365 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXA3O43365 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.31■□□□□ 0.52
HOXA3O43365 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.31■□□□□ 0.52
HOXA3O43365 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HOXA3O43365 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXA3O43365 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HOXA3O43365 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 155 ms