Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC188H7C350 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC188H7C350 MIR639-201ENST00000384974 98 ntBASIC23.81■■□□□ 1.4
CCDC188H7C350 HES4-204ENST00000484667 667 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC188H7C350 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC188H7C350 CEP120-209ENST00000515110 606 ntTSL 3 BASIC23.81■■□□□ 1.4
CCDC188H7C350 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC188H7C350 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC188H7C350 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
CCDC188H7C350 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC188H7C350 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC188H7C350 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
CCDC188H7C350 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC188H7C350 EP400NL-214ENST00000641289 2402 ntBASIC23.81■■□□□ 1.4
CCDC188H7C350 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC23.81■■□□□ 1.4
CCDC188H7C350 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
CCDC188H7C350 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC23.8■■□□□ 1.4
CCDC188H7C350 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC188H7C350 C1orf229-201ENST00000623686 2258 ntBASIC23.8■■□□□ 1.4
CCDC188H7C350 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC23.8■■□□□ 1.4
CCDC188H7C350 HES4-202ENST00000428771 1040 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC188H7C350 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
CCDC188H7C350 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC188H7C350 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC188H7C350 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC188H7C350 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.79■■□□□ 1.4
CCDC188H7C350 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC188H7C350 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC188H7C350 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC188H7C350 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC23.79■■□□□ 1.4
CCDC188H7C350 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC188H7C350 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC23.79■■□□□ 1.4
CCDC188H7C350 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC188H7C350 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC188H7C350 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC188H7C350 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC188H7C350 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC188H7C350 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC188H7C350 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
CCDC188H7C350 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC188H7C350 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC23.78■■□□□ 1.4
CCDC188H7C350 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC23.77■■□□□ 1.4
CCDC188H7C350 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
CCDC188H7C350 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
CCDC188H7C350 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC188H7C350 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC188H7C350 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC188H7C350 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
CCDC188H7C350 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
CCDC188H7C350 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
CCDC188H7C350 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 SSSCA1-AS1-201ENST00000567594 614 ntBASIC23.76■■□□□ 1.39
CCDC188H7C350 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC188H7C350 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC188H7C350 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CCDC188H7C350 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC188H7C350 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.75■■□□□ 1.39
CCDC188H7C350 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC188H7C350 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.75■■□□□ 1.39
CCDC188H7C350 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC188H7C350 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
CCDC188H7C350 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC188H7C350 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC188H7C350 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.75■■□□□ 1.39
CCDC188H7C350 LINC00565-201ENST00000562710 2331 ntBASIC23.74■■□□□ 1.39
CCDC188H7C350 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC188H7C350 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
CCDC188H7C350 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.74■■□□□ 1.39
CCDC188H7C350 LINC00526-201ENST00000581067 1875 ntBASIC23.73■■□□□ 1.39
CCDC188H7C350 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC188H7C350 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC188H7C350 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC188H7C350 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
CCDC188H7C350 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC188H7C350 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC188H7C350 GUSBP5-202ENST00000510805 1989 ntBASIC23.72■■□□□ 1.39
CCDC188H7C350 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC188H7C350 RPS2P7-201ENST00000447334 885 ntBASIC23.72■■□□□ 1.39
CCDC188H7C350 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC23.72■■□□□ 1.39
CCDC188H7C350 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC188H7C350 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC23.72■■□□□ 1.39
CCDC188H7C350 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
CCDC188H7C350 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms