Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 SHROOM1-203ENST00000378679 4019 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 RRAGB-202ENST00000374941 2061 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 RBPMS2P1-201ENST00000437762 623 ntBASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 KRT18P58-201ENST00000527480 1120 ntBASIC13.69□□□□□ -0.22
CLN6Q9NWW5 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AL513210.1-201ENST00000629608 234 ntBASIC13.69□□□□□ -0.22
CLN6Q9NWW5 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 MTA3-202ENST00000405592 5832 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 CCDC88A-204ENST00000413716 9586 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.69□□□□□ -0.22
CLN6Q9NWW5 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 RIPOR3-202ENST00000327979 4377 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 SRP54-202ENST00000546080 2187 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 FUT8-203ENST00000360689 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 ATP13A1-202ENST00000357324 3861 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 GPS2P2-201ENST00000430745 888 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 SPDYE14P-201ENST00000442619 822 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AL079307.3-201ENST00000556114 283 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AF228730.6-201ENST00000641497 218 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AC084121.3-201ENST00000641716 218 ntBASIC13.68□□□□□ -0.22
CLN6Q9NWW5 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PCDH8-201ENST00000338862 3708 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
CLN6Q9NWW5 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms