Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 AC008972.2-201ENST00000606587 494 ntBASIC21.83■■□□□ 1.09
SCAPERQ9BY12 RCC1-201ENST00000373831 1577 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SCAPERQ9BY12 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
SCAPERQ9BY12 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.08
SCAPERQ9BY12 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
SCAPERQ9BY12 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SAT1-201ENST00000379251 801 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SAT1-202ENST00000379253 909 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SAT1-203ENST00000379254 868 ntTSL 3 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 MIR1301-201ENST00000408518 82 ntBASIC21.82■■□□□ 1.08
SCAPERQ9BY12 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 YPEL4-209ENST00000534711 889 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 KRT8P2-201ENST00000556193 944 ntBASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 FUCA1P1-201ENST00000374476 1351 ntBASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC21.82■■□□□ 1.08
SCAPERQ9BY12 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 HNRNPA1P58-201ENST00000403629 610 ntBASIC21.81■■□□□ 1.08
SCAPERQ9BY12 PPP1R2P4-201ENST00000424051 595 ntBASIC21.81■■□□□ 1.08
SCAPERQ9BY12 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 GOLGA2P7-209ENST00000560408 745 ntBASIC21.81■■□□□ 1.08
SCAPERQ9BY12 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 MIR5001-201ENST00000580185 100 ntBASIC21.81■■□□□ 1.08
SCAPERQ9BY12 MBP-238ENST00000580402 915 ntTSL 5 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 AC090340.1-201ENST00000620778 4980 ntBASIC21.81■■□□□ 1.08
SCAPERQ9BY12 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
SCAPERQ9BY12 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC006329.1-201ENST00000419422 705 ntTSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 HINT1-205ENST00000508488 703 ntTSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LINC00528-201ENST00000600723 2160 ntBASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC067931.2-201ENST00000623655 2003 ntBASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 PCDHGB8P-201ENST00000502926 1973 ntBASIC21.8■■□□□ 1.08
SCAPERQ9BY12 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 KCNE1-203ENST00000399286 1204 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 OR51A9P-201ENST00000422578 911 ntBASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 HLA-DPA2-205ENST00000433582 733 ntBASIC21.8■■□□□ 1.08
SCAPERQ9BY12 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 RPS23-207ENST00000511844 530 ntTSL 2 BASIC21.8■■□□□ 1.08
SCAPERQ9BY12 AC009779.3-204ENST00000549424 367 ntTSL 3 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms