Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.05■□□□□ 0.32
USP28Q96RU2 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.05■□□□□ 0.32
USP28Q96RU2 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.05■□□□□ 0.32
USP28Q96RU2 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 INE2-201ENST00000630399 1874 ntBASIC17.05■□□□□ 0.32
USP28Q96RU2 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
USP28Q96RU2 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
USP28Q96RU2 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
USP28Q96RU2 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
USP28Q96RU2 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
USP28Q96RU2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 BEND3P1-201ENST00000421591 1944 ntBASIC17.04■□□□□ 0.32
USP28Q96RU2 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 MRPL37P1-201ENST00000592451 1337 ntBASIC17.04■□□□□ 0.32
USP28Q96RU2 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
USP28Q96RU2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC17.04■□□□□ 0.32
USP28Q96RU2 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.04■□□□□ 0.32
USP28Q96RU2 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 FAM207CP-201ENST00000443486 507 ntBASIC17.04■□□□□ 0.32
USP28Q96RU2 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC17.04■□□□□ 0.32
USP28Q96RU2 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.04■□□□□ 0.32
USP28Q96RU2 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
USP28Q96RU2 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
USP28Q96RU2 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 AC215219.1-201ENST00000400706 1817 ntBASIC17.04■□□□□ 0.32
USP28Q96RU2 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
USP28Q96RU2 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
USP28Q96RU2 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC020910.5-201ENST00000623668 1865 ntBASIC17.03■□□□□ 0.32
USP28Q96RU2 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC17.03■□□□□ 0.32
USP28Q96RU2 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.03■□□□□ 0.32
USP28Q96RU2 LAT2-205ENST00000460943 2527 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AC011840.2-201ENST00000563063 1520 ntBASIC17.03■□□□□ 0.32
USP28Q96RU2 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.03■□□□□ 0.32
USP28Q96RU2 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.03■□□□□ 0.32
USP28Q96RU2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.03■□□□□ 0.32
USP28Q96RU2 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
USP28Q96RU2 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.2 ms