Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 SURF4-203ENST00000371991 715 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 JPT2-203ENST00000382711 894 ntTSL 4 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 HLA-DMA-203ENST00000395305 777 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 NME4-203ENST00000397722 1232 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 RPSAP15-201ENST00000448168 861 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 DPY19L2P5-201ENST00000456300 331 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 IGKV1OR-2-201ENST00000457995 350 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC010632.2-201ENST00000588369 1224 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 NAMA-206ENST00000605377 509 ntTSL 5 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 Z98259.2-201ENST00000641583 609 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 AC092384.3-202ENST00000564646 2873 ntBASIC16.05■□□□□ 0.16
LRCH3Q96II8 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.05■□□□□ 0.16
LRCH3Q96II8 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
LRCH3Q96II8 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AURKB-201ENST00000316199 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 BANF1P3-201ENST00000412556 261 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 AL691447.1-201ENST00000419456 387 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 RNLS-203ENST00000437752 525 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 RN7SL846P-201ENST00000467429 292 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC083801.1-201ENST00000491689 358 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 RPS23-204ENST00000507980 836 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC009712.1-201ENST00000564938 316 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 CR392039.1-201ENST00000623217 204 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 LINC01165-201ENST00000445190 1623 ntBASIC16.04■□□□□ 0.16
LRCH3Q96II8 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
LRCH3Q96II8 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
LRCH3Q96II8 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 INE2-201ENST00000630399 1874 ntBASIC16.03■□□□□ 0.16
LRCH3Q96II8 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 AC020931.1-201ENST00000589622 1346 ntBASIC16.03■□□□□ 0.16
LRCH3Q96II8 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.03■□□□□ 0.16
LRCH3Q96II8 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
LRCH3Q96II8 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms