Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC12.84□□□□□ -0.35
ABCA4P78363 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
ABCA4P78363 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.35
ABCA4P78363 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC12.83□□□□□ -0.35
ABCA4P78363 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
ABCA4P78363 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
ABCA4P78363 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC12.83□□□□□ -0.35
ABCA4P78363 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC12.83□□□□□ -0.35
ABCA4P78363 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
ABCA4P78363 AC078991.1-201ENST00000437297 610 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 KLF2P1-201ENST00000447438 1042 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 CTBP2P4-201ENST00000513884 920 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.35
ABCA4P78363 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.35
ABCA4P78363 MIR4754-201ENST00000582477 89 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 IRF3-215ENST00000596822 823 ntTSL 3 BASIC12.83□□□□□ -0.35
ABCA4P78363 AL132994.2-201ENST00000603120 687 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 AL157813.1-201ENST00000612996 587 ntBASIC12.83□□□□□ -0.35
ABCA4P78363 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
ABCA4P78363 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.83□□□□□ -0.36
ABCA4P78363 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.83□□□□□ -0.36
ABCA4P78363 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC12.83□□□□□ -0.36
ABCA4P78363 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC12.83□□□□□ -0.36
ABCA4P78363 FGFR3P1-201ENST00000449999 601 ntBASIC12.83□□□□□ -0.36
ABCA4P78363 AC116345.2-201ENST00000512837 523 ntBASIC12.83□□□□□ -0.36
ABCA4P78363 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC12.83□□□□□ -0.36
ABCA4P78363 AC023090.2-201ENST00000625182 2110 ntBASIC12.83□□□□□ -0.36
ABCA4P78363 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
ABCA4P78363 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC12.83□□□□□ -0.36
ABCA4P78363 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
ABCA4P78363 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC12.83□□□□□ -0.36
ABCA4P78363 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 AL513523.2-202ENST00000427283 2040 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 TLE1P1-201ENST00000422965 589 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC12.82□□□□□ -0.36
ABCA4P78363 AL136301.1-201ENST00000615830 422 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 AC112693.3-201ENST00000624819 1983 ntBASIC12.82□□□□□ -0.36
ABCA4P78363 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 ROCK1-201ENST00000399799 9484 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 AMT-239ENST00000636865 1914 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC12.82□□□□□ -0.36
ABCA4P78363 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
ABCA4P78363 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC12.82□□□□□ -0.36
ABCA4P78363 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms