Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNF4P78317 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 API5-203ENST00000455725 2257 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNF4P78317 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
RNF4P78317 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNF4P78317 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
RNF4P78317 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC13.83□□□□□ -0.19
RNF4P78317 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
RNF4P78317 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
RNF4P78317 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
RNF4P78317 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.19
RNF4P78317 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RNF4P78317 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
RNF4P78317 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RNF4P78317 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 AC009093.2-202ENST00000620513 2079 ntBASIC13.83□□□□□ -0.2
RNF4P78317 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 CICP23-201ENST00000605013 2741 ntBASIC13.83□□□□□ -0.2
RNF4P78317 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC13.83□□□□□ -0.2
RNF4P78317 CHMP1AP1-201ENST00000445563 662 ntBASIC13.83□□□□□ -0.2
RNF4P78317 Z93015.1-201ENST00000451718 390 ntBASIC13.83□□□□□ -0.2
RNF4P78317 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC13.83□□□□□ -0.2
RNF4P78317 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC13.83□□□□□ -0.2
RNF4P78317 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC13.83□□□□□ -0.2
RNF4P78317 MIR4683-201ENST00000579659 81 ntBASIC13.83□□□□□ -0.2
RNF4P78317 EEF1DP1-201ENST00000585891 896 ntBASIC13.83□□□□□ -0.2
RNF4P78317 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC13.83□□□□□ -0.2
RNF4P78317 AC002472.3-201ENST00000640124 621 ntBASIC13.83□□□□□ -0.2
RNF4P78317 AL023775.1-201ENST00000454907 1746 ntBASIC13.83□□□□□ -0.2
RNF4P78317 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 REXO1L6P-201ENST00000603433 1515 ntBASIC13.83□□□□□ -0.2
RNF4P78317 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC13.83□□□□□ -0.2
RNF4P78317 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RNF4P78317 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNF4P78317 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.82□□□□□ -0.2
RNF4P78317 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 NCK2-206ENST00000522586 490 ntTSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 RIT1-205ENST00000539040 919 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms