Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
PKNOX1P55347 AL137783.1-201ENST00000623494 1896 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 THBS4-201ENST00000350881 3222 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
PKNOX1P55347 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC14.71□□□□□ -0.05
PKNOX1P55347 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 AC004890.2-204ENST00000481968 304 ntBASIC14.71□□□□□ -0.05
PKNOX1P55347 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.71□□□□□ -0.05
PKNOX1P55347 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.71□□□□□ -0.05
PKNOX1P55347 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.71□□□□□ -0.05
PKNOX1P55347 AC093813.1-201ENST00000605066 256 ntBASIC14.71□□□□□ -0.05
PKNOX1P55347 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.71□□□□□ -0.05
PKNOX1P55347 AL390754.1-201ENST00000619088 582 ntBASIC14.71□□□□□ -0.05
PKNOX1P55347 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC14.71□□□□□ -0.05
PKNOX1P55347 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.05
PKNOX1P55347 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
PKNOX1P55347 XPR1-201ENST00000367589 4126 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PKNOX1P55347 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
PKNOX1P55347 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC14.71□□□□□ -0.06
PKNOX1P55347 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PKNOX1P55347 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.71□□□□□ -0.06
PKNOX1P55347 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
PKNOX1P55347 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 CICP8-201ENST00000455800 2813 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC14.7□□□□□ -0.06
PKNOX1P55347 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.7□□□□□ -0.06
PKNOX1P55347 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 KRT18P28-201ENST00000453838 1332 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.7□□□□□ -0.06
PKNOX1P55347 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.7□□□□□ -0.06
PKNOX1P55347 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC14.7□□□□□ -0.06
PKNOX1P55347 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.7□□□□□ -0.06
PKNOX1P55347 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.7□□□□□ -0.06
PKNOX1P55347 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14.7□□□□□ -0.06
PKNOX1P55347 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 AC055876.3-201ENST00000431496 288 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 RN7SL399P-201ENST00000471648 279 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.7□□□□□ -0.06
PKNOX1P55347 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AC138649.4-201ENST00000612222 287 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 AC023090.2-201ENST00000625182 2110 ntBASIC14.7□□□□□ -0.06
PKNOX1P55347 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
PKNOX1P55347 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC14.7□□□□□ -0.06
PKNOX1P55347 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
PKNOX1P55347 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms