Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC14.17□□□□□ -0.14
LIM2P55344 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 LINC01230-201ENST00000625222 3017 ntBASIC14.17□□□□□ -0.14
LIM2P55344 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.17□□□□□ -0.14
LIM2P55344 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
LIM2P55344 AL138725.1-201ENST00000407347 1314 ntBASIC14.16□□□□□ -0.14
LIM2P55344 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.16□□□□□ -0.14
LIM2P55344 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 AC015656.1-201ENST00000624209 3578 ntBASIC14.16□□□□□ -0.14
LIM2P55344 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.16□□□□□ -0.14
LIM2P55344 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 AC006001.1-201ENST00000325130 474 ntBASIC14.16□□□□□ -0.14
LIM2P55344 RN7SKP230-201ENST00000365642 335 ntBASIC14.16□□□□□ -0.14
LIM2P55344 GZMB-202ENST00000382540 816 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
LIM2P55344 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 RPL7P3-201ENST00000441388 714 ntBASIC14.16□□□□□ -0.14
LIM2P55344 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 KLF2P4-201ENST00000451959 1225 ntBASIC14.16□□□□□ -0.14
LIM2P55344 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 HILS1-202ENST00000545329 423 ntBASIC14.16□□□□□ -0.14
LIM2P55344 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC14.16□□□□□ -0.14
LIM2P55344 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 AC138696.2-201ENST00000607376 223 ntBASIC14.16□□□□□ -0.14
LIM2P55344 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 RHOXF1P1-202ENST00000635473 501 ntBASIC14.16□□□□□ -0.14
LIM2P55344 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
LIM2P55344 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.16□□□□□ -0.14
LIM2P55344 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
LIM2P55344 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.16□□□□□ -0.14
LIM2P55344 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
LIM2P55344 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 FKBP4P6-201ENST00000457486 1332 ntBASIC14.15□□□□□ -0.14
LIM2P55344 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 MIR1909-201ENST00000411312 80 ntBASIC14.15□□□□□ -0.14
LIM2P55344 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC14.15□□□□□ -0.14
LIM2P55344 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
LIM2P55344 CTBP2P5-201ENST00000454986 1264 ntBASIC14.15□□□□□ -0.14
LIM2P55344 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC14.15□□□□□ -0.14
LIM2P55344 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.15□□□□□ -0.14
LIM2P55344 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.15□□□□□ -0.14
LIM2P55344 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC14.15□□□□□ -0.14
LIM2P55344 AHRR-211ENST00000515206 462 ntTSL 5 BASIC14.15□□□□□ -0.14
LIM2P55344 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.15□□□□□ -0.14
LIM2P55344 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
LIM2P55344 AC106820.3-201ENST00000561653 397 ntBASIC14.15□□□□□ -0.14
LIM2P55344 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms