Protein–RNA interactions for Protein: P12645

BMP3, Bone morphogenetic protein 3, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BMP3P12645 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
BMP3P12645 RN7SKP214-201ENST00000364208 315 ntBASIC17.1■□□□□ 0.33
BMP3P12645 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC17.1■□□□□ 0.33
BMP3P12645 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 AC106786.1-201ENST00000442777 792 ntTSL 3 BASIC17.1■□□□□ 0.33
BMP3P12645 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 RCC2P8-201ENST00000502779 1035 ntBASIC17.1■□□□□ 0.33
BMP3P12645 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC17.1■□□□□ 0.33
BMP3P12645 FADS2-212ENST00000522639 360 ntTSL 5 BASIC17.1■□□□□ 0.33
BMP3P12645 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC17.1■□□□□ 0.33
BMP3P12645 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 FADS2-215ENST00000574708 385 ntTSL 3 BASIC17.1■□□□□ 0.33
BMP3P12645 ARL16-210ENST00000574938 751 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 AC097724.1-201ENST00000609581 426 ntBASIC17.1■□□□□ 0.33
BMP3P12645 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BMP3P12645 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 AC144522.1-201ENST00000625111 1658 ntBASIC17.1■□□□□ 0.33
BMP3P12645 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.1■□□□□ 0.33
BMP3P12645 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
BMP3P12645 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
BMP3P12645 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
BMP3P12645 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 MYB-242ENST00000618728 3545 ntTSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
BMP3P12645 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
BMP3P12645 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
BMP3P12645 HNRNPA1P41-201ENST00000397777 928 ntBASIC17.09■□□□□ 0.33
BMP3P12645 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 HNRNPA1P27-201ENST00000412087 955 ntBASIC17.09■□□□□ 0.33
BMP3P12645 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 AL133466.1-201ENST00000447582 150 ntBASIC17.09■□□□□ 0.33
BMP3P12645 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC17.09■□□□□ 0.33
BMP3P12645 AC006122.1-201ENST00000493323 440 ntBASIC17.09■□□□□ 0.33
BMP3P12645 AC245884.6-201ENST00000515672 1067 ntBASIC17.09■□□□□ 0.33
BMP3P12645 AC024681.1-201ENST00000521917 487 ntBASIC17.09■□□□□ 0.33
BMP3P12645 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC17.09■□□□□ 0.33
BMP3P12645 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC17.09■□□□□ 0.33
BMP3P12645 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC17.09■□□□□ 0.33
BMP3P12645 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 AC091812.3-201ENST00000621362 345 ntBASIC17.09■□□□□ 0.33
BMP3P12645 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 AL590440.2-201ENST00000641973 1595 ntBASIC17.09■□□□□ 0.33
BMP3P12645 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
BMP3P12645 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
BMP3P12645 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
BMP3P12645 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
BMP3P12645 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
BMP3P12645 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC17.08■□□□□ 0.33
BMP3P12645 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
BMP3P12645 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC17.08■□□□□ 0.33
BMP3P12645 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
BMP3P12645 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC17.08■□□□□ 0.33
BMP3P12645 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC17.08■□□□□ 0.33
BMP3P12645 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
BMP3P12645 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
BMP3P12645 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms