Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 MIR4469-201ENST00000583919 79 ntBASIC16.54■□□□□ 0.24
TPM1P09493 AC000095.1-201ENST00000603208 874 ntBASIC16.54■□□□□ 0.24
TPM1P09493 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
TPM1P09493 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC16.54■□□□□ 0.24
TPM1P09493 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 ALDH3B1-201ENST00000342456 2786 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 SACM1L-201ENST00000389061 3723 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
TPM1P09493 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC16.54■□□□□ 0.24
TPM1P09493 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TPM1P09493 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM1P09493 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM1P09493 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
TPM1P09493 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 CPXM2-201ENST00000241305 3554 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 DGCR9-201ENST00000609630 2415 ntBASIC16.53■□□□□ 0.24
TPM1P09493 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM1P09493 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 SDHAP3-202ENST00000515467 728 ntBASIC16.53■□□□□ 0.24
TPM1P09493 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.53■□□□□ 0.24
TPM1P09493 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC16.53■□□□□ 0.24
TPM1P09493 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.53■□□□□ 0.24
TPM1P09493 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 GOLGA8VP-201ENST00000559009 1798 ntBASIC16.53■□□□□ 0.24
TPM1P09493 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
TPM1P09493 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.53■□□□□ 0.24
TPM1P09493 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 GAB1-202ENST00000262995 7981 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TPM1P09493 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
TPM1P09493 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 OLFML2A-203ENST00000373580 6425 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM1P09493 PGLYRP2-201ENST00000292609 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 AC008894.2-201ENST00000597983 2987 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM1P09493 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.52■□□□□ 0.24
TPM1P09493 AL354702.1-201ENST00000442006 1960 ntBASIC16.52■□□□□ 0.24
TPM1P09493 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 RPL37AP1-201ENST00000412502 279 ntBASIC16.52■□□□□ 0.24
TPM1P09493 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.52■□□□□ 0.24
TPM1P09493 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.52■□□□□ 0.24
TPM1P09493 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TPM1P09493 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.52■□□□□ 0.24
TPM1P09493 AC004461.2-201ENST00000629517 803 ntBASIC16.52■□□□□ 0.24
TPM1P09493 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
TPM1P09493 AC027612.1-201ENST00000445234 2395 ntBASIC16.52■□□□□ 0.23
TPM1P09493 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms