Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC13.47□□□□□ -0.25
SPTA1P02549 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 MRPL37P1-201ENST00000592451 1337 ntBASIC13.47□□□□□ -0.25
SPTA1P02549 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC13.47□□□□□ -0.25
SPTA1P02549 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
SPTA1P02549 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.47□□□□□ -0.25
SPTA1P02549 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
SPTA1P02549 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
SPTA1P02549 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.47□□□□□ -0.25
SPTA1P02549 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC13.47□□□□□ -0.25
SPTA1P02549 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
SPTA1P02549 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC13.47□□□□□ -0.25
SPTA1P02549 AC006548.2-201ENST00000605217 529 ntBASIC13.47□□□□□ -0.25
SPTA1P02549 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 AGGF1P2-201ENST00000426656 2106 ntBASIC13.46□□□□□ -0.25
SPTA1P02549 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 ENPP7P8-202ENST00000527856 1345 ntBASIC13.46□□□□□ -0.25
SPTA1P02549 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.25
SPTA1P02549 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
SPTA1P02549 ATXN3-201ENST00000340660 1205 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 CDKN2C-202ENST00000371761 1220 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 DUTP3-201ENST00000450025 415 ntBASIC13.46□□□□□ -0.25
SPTA1P02549 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
SPTA1P02549 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC13.46□□□□□ -0.25
SPTA1P02549 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.46□□□□□ -0.25
SPTA1P02549 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC13.46□□□□□ -0.25
SPTA1P02549 AP001184.1-201ENST00000637936 376 ntBASIC13.46□□□□□ -0.25
SPTA1P02549 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.46□□□□□ -0.25
SPTA1P02549 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SPTA1P02549 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 PCDHB19P-201ENST00000570871 2371 ntBASIC13.46□□□□□ -0.26
SPTA1P02549 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.46□□□□□ -0.26
SPTA1P02549 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC13.46□□□□□ -0.26
SPTA1P02549 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SPTA1P02549 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 ATP5H-202ENST00000344546 553 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 NCR3-202ENST00000376071 541 ntTSL 5 BASIC13.45□□□□□ -0.26
SPTA1P02549 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC13.45□□□□□ -0.26
SPTA1P02549 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
SPTA1P02549 ATP2A1-AS1-201ENST00000561547 558 ntTSL 2 BASIC13.45□□□□□ -0.26
SPTA1P02549 AC019294.2-203ENST00000569596 594 ntTSL 3 BASIC13.45□□□□□ -0.26
SPTA1P02549 STXBP6-202ENST00000396700 4021 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
SPTA1P02549 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC13.45□□□□□ -0.26
SPTA1P02549 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
SPTA1P02549 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SPTA1P02549 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms