Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.76■□□□□ 0.43
COL4A1P02462 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.76■□□□□ 0.43
COL4A1P02462 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
COL4A1P02462 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL4A1P02462 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC17.76■□□□□ 0.43
COL4A1P02462 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC17.76■□□□□ 0.43
COL4A1P02462 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC17.76■□□□□ 0.43
COL4A1P02462 RGS5-216ENST00000449680 788 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC17.76■□□□□ 0.43
COL4A1P02462 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
COL4A1P02462 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL4A1P02462 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
COL4A1P02462 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
COL4A1P02462 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL4A1P02462 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.75■□□□□ 0.43
COL4A1P02462 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL4A1P02462 AC215219.1-201ENST00000400706 1817 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL4A1P02462 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL4A1P02462 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 RN7SKP109-201ENST00000410592 316 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 AC004837.1-201ENST00000446267 564 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 RN7SL530P-201ENST00000485097 298 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC17.75■□□□□ 0.43
COL4A1P02462 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL4A1P02462 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC17.75■□□□□ 0.43
COL4A1P02462 MIR2392-201ENST00000584881 84 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC17.75■□□□□ 0.43
COL4A1P02462 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC17.75■□□□□ 0.43
COL4A1P02462 CICP14-201ENST00000629111 2732 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 AC144831.1-201ENST00000573312 2656 ntBASIC17.75■□□□□ 0.43
COL4A1P02462 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
COL4A1P02462 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL4A1P02462 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 HLA-DMA-203ENST00000395305 777 ntBASIC17.74■□□□□ 0.43
COL4A1P02462 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC17.74■□□□□ 0.43
COL4A1P02462 SORD2P-201ENST00000558556 1069 ntBASIC17.74■□□□□ 0.43
COL4A1P02462 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A1P02462 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC17.74■□□□□ 0.43
COL4A1P02462 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL4A1P02462 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 AL591122.2-201ENST00000624125 1853 ntBASIC17.74■□□□□ 0.43
COL4A1P02462 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.74■□□□□ 0.43
COL4A1P02462 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL4A1P02462 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL4A1P02462 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A1P02462 TXNRD2-206ENST00000462330 1129 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A1P02462 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC17.74■□□□□ 0.43
COL4A1P02462 RNA5SP417-201ENST00000516459 108 ntBASIC17.74■□□□□ 0.43
COL4A1P02462 KLF17P1-201ENST00000547105 1126 ntBASIC17.74■□□□□ 0.43
COL4A1P02462 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC17.74■□□□□ 0.43
COL4A1P02462 AL132780.4-201ENST00000624870 1135 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms