Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RERG-205ENST00000537647 935 ntTSL 2 BASIC14.51□□□□□ -0.09
TNFP01375 SNORD3B-2-202ENST00000571722 791 ntBASIC14.51□□□□□ -0.09
TNFP01375 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC14.51□□□□□ -0.09
TNFP01375 AC005962.1-201ENST00000584100 773 ntBASIC14.51□□□□□ -0.09
TNFP01375 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC14.51□□□□□ -0.09
TNFP01375 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC14.51□□□□□ -0.09
TNFP01375 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC14.51□□□□□ -0.09
TNFP01375 AP000346.4-201ENST00000614827 381 ntBASIC14.51□□□□□ -0.09
TNFP01375 KLF3-AS1-207ENST00000620339 558 ntTSL 4 BASIC14.51□□□□□ -0.09
TNFP01375 RPL35-206ENST00000629845 340 ntTSL 5 BASIC14.51□□□□□ -0.09
TNFP01375 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TNFP01375 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.51□□□□□ -0.09
TNFP01375 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC14.51□□□□□ -0.09
TNFP01375 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.51□□□□□ -0.09
TNFP01375 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.51□□□□□ -0.09
TNFP01375 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
TNFP01375 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
TNFP01375 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TNFP01375 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.51□□□□□ -0.09
TNFP01375 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.51□□□□□ -0.09
TNFP01375 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
TNFP01375 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
TNFP01375 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TNFP01375 AC073347.1-201ENST00000421633 2643 ntBASIC14.5□□□□□ -0.09
TNFP01375 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC14.5□□□□□ -0.09
TNFP01375 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.5□□□□□ -0.09
TNFP01375 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC14.5□□□□□ -0.09
TNFP01375 HLA-J-204ENST00000495278 958 ntBASIC14.5□□□□□ -0.09
TNFP01375 AC125604.1-201ENST00000496255 707 ntBASIC14.5□□□□□ -0.09
TNFP01375 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 MIR3619-201ENST00000579667 83 ntBASIC14.5□□□□□ -0.09
TNFP01375 AC084346.2-201ENST00000607097 949 ntBASIC14.5□□□□□ -0.09
TNFP01375 CU633904.3-201ENST00000624042 1029 ntBASIC14.5□□□□□ -0.09
TNFP01375 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.5□□□□□ -0.09
TNFP01375 AC138627.1-207ENST00000641560 1006 ntBASIC14.5□□□□□ -0.09
TNFP01375 Z98259.2-201ENST00000641583 609 ntBASIC14.5□□□□□ -0.09
TNFP01375 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 OR2I1P-209ENST00000641730 5365 ntBASIC14.5□□□□□ -0.09
TNFP01375 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.5□□□□□ -0.09
TNFP01375 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.5□□□□□ -0.09
TNFP01375 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
TNFP01375 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC14.5□□□□□ -0.09
TNFP01375 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.5□□□□□ -0.09
TNFP01375 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
TNFP01375 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.49□□□□□ -0.09
TNFP01375 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 AL157791.1-201ENST00000553667 1699 ntBASIC14.49□□□□□ -0.09
TNFP01375 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
TNFP01375 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.49□□□□□ -0.09
TNFP01375 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
TNFP01375 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC14.49□□□□□ -0.09
TNFP01375 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
TNFP01375 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
TNFP01375 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms