Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 MIR4745-201ENST00000577608 62 ntBASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 AC003102.2-201ENST00000589195 1469 ntBASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 HSPA7-201ENST00000445535 1927 ntBASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VPS29Q9UBQ0 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SERF2-209ENST00000409646 559 ntTSL 4 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 FO681548.1-201ENST00000455617 1132 ntBASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 TERF1P3-201ENST00000505638 1227 ntBASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 AC190387.1-201ENST00000551683 408 ntBASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 DKKL1-202ENST00000594268 524 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC14.34□□□□□ -0.11
VPS29Q9UBQ0 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 LINC01230-201ENST00000625222 3017 ntBASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 ECHDC1-220ENST00000528402 1449 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
VPS29Q9UBQ0 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
VPS29Q9UBQ0 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms