Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC11.57□□□□□ -0.56
CCDC140Q96MF4 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 BX640514.1-201ENST00000583223 1918 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AL136172.1-201ENST00000598590 1394 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC092135.3-201ENST00000624151 1846 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 KRT43P-201ENST00000434019 910 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC016694.1-201ENST00000434179 700 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TPT1P11-201ENST00000458482 498 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 GCOM2-201ENST00000509133 1104 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC106820.3-201ENST00000561653 397 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 APRT-204ENST00000563655 709 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AC138951.2-201ENST00000623455 1161 ntBASIC11.56□□□□□ -0.56
CCDC140Q96MF4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC11.56□□□□□ -0.56
CCDC140Q96MF4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AP000593.2-201ENST00000542775 1433 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 GAPDHP21-201ENST00000450301 1010 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC007551.1-201ENST00000457394 519 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AP003171.2-201ENST00000528208 925 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC078819.1-201ENST00000547454 765 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC012085.1-201ENST00000548270 765 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 ADAM3B-201ENST00000569937 840 ntBASIC11.55□□□□□ -0.56
CCDC140Q96MF4 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
CCDC140Q96MF4 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms