Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 FLJ16779-201ENST00000612722 7638 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 AC005229.1-201ENST00000392885 409 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.54■□□□□ 0.24
HPS3Q969F9 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC16.54■□□□□ 0.24
HPS3Q969F9 FAM197Y7-201ENST00000432892 766 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.54■□□□□ 0.24
HPS3Q969F9 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.54■□□□□ 0.24
HPS3Q969F9 AL355864.2-201ENST00000447420 863 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 CROCCP4-201ENST00000457096 498 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 AP003171.2-201ENST00000528208 925 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
HPS3Q969F9 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.54■□□□□ 0.24
HPS3Q969F9 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.54■□□□□ 0.24
HPS3Q969F9 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.54■□□□□ 0.24
HPS3Q969F9 BTNL10-201ENST00000595971 695 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 AC138466.3-201ENST00000619983 221 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC16.54■□□□□ 0.24
HPS3Q969F9 AL603764.1-201ENST00000636452 321 ntBASIC16.54■□□□□ 0.24
HPS3Q969F9 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 TSPAN18-207ENST00000520358 3316 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
HPS3Q969F9 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC16.54■□□□□ 0.24
HPS3Q969F9 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.54■□□□□ 0.24
HPS3Q969F9 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 TRAFD1-201ENST00000257604 3178 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
HPS3Q969F9 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC16.54■□□□□ 0.24
HPS3Q969F9 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
HPS3Q969F9 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
HPS3Q969F9 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 AC012617.1-204ENST00000586340 2305 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 C8orf49-201ENST00000525043 1968 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
HPS3Q969F9 GRAP-202ENST00000395635 834 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.53■□□□□ 0.24
HPS3Q969F9 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.53■□□□□ 0.24
HPS3Q969F9 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.53■□□□□ 0.24
HPS3Q969F9 MESTP3-201ENST00000503460 968 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 AC022447.6-201ENST00000515522 438 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC16.53■□□□□ 0.24
HPS3Q969F9 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.53■□□□□ 0.24
HPS3Q969F9 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.53■□□□□ 0.24
HPS3Q969F9 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 AC233724.13-201ENST00000598383 410 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 AC138696.2-201ENST00000607376 223 ntBASIC16.53■□□□□ 0.24
HPS3Q969F9 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC16.53■□□□□ 0.24
HPS3Q969F9 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC16.53■□□□□ 0.24
HPS3Q969F9 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
HPS3Q969F9 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
HPS3Q969F9 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
HPS3Q969F9 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.52■□□□□ 0.24
HPS3Q969F9 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
HPS3Q969F9 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
HPS3Q969F9 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms