Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 METTL26-214ENST00000614890 801 ntTSL 3 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
ATL3Q6DD88 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
ATL3Q6DD88 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 AC015688.4-201ENST00000580780 1647 ntBASIC17.03■□□□□ 0.32
ATL3Q6DD88 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 AC067750.1-201ENST00000608826 6545 ntBASIC17.03■□□□□ 0.32
ATL3Q6DD88 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 DDHD2-205ENST00000520272 4532 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 RN7SKP230-201ENST00000365642 335 ntBASIC17.03■□□□□ 0.32
ATL3Q6DD88 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 MYCLP2-201ENST00000449268 967 ntBASIC17.03■□□□□ 0.32
ATL3Q6DD88 FO681548.1-201ENST00000455617 1132 ntBASIC17.03■□□□□ 0.32
ATL3Q6DD88 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
ATL3Q6DD88 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
ATL3Q6DD88 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 CICP4-201ENST00000447359 2812 ntBASIC17.02■□□□□ 0.32
ATL3Q6DD88 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 GSN-209ENST00000449733 2702 ntTSL 2 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
ATL3Q6DD88 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.02■□□□□ 0.32
ATL3Q6DD88 AC098850.1-201ENST00000419919 790 ntBASIC17.02■□□□□ 0.32
ATL3Q6DD88 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms