Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.73□□□□□ -0.05
PKNOX1P55347 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 NUS1P3-201ENST00000423502 862 ntBASIC14.73□□□□□ -0.05
PKNOX1P55347 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.73□□□□□ -0.05
PKNOX1P55347 URGCP-206ENST00000446958 365 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 TPT1P11-201ENST00000458482 498 ntBASIC14.73□□□□□ -0.05
PKNOX1P55347 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.73□□□□□ -0.05
PKNOX1P55347 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
PKNOX1P55347 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 GABPB1-202ENST00000359031 1633 ntTSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.73□□□□□ -0.05
PKNOX1P55347 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.73□□□□□ -0.05
PKNOX1P55347 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
PKNOX1P55347 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 MST1P2-201ENST00000457982 2291 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 AC011474.4-201ENST00000623523 2076 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 GOLGA2-212ENST00000609374 2973 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 HLA-DRB6-201ENST00000411500 1235 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.72□□□□□ -0.05
PKNOX1P55347 RPL13AP25-201ENST00000484130 612 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 SPDYE18-201ENST00000510091 1050 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.72□□□□□ -0.05
PKNOX1P55347 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 DUX4L27-201ENST00000554796 1261 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.72□□□□□ -0.05
PKNOX1P55347 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.72□□□□□ -0.05
PKNOX1P55347 AL049840.4-201ENST00000602422 811 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 AC008738.7-201ENST00000609744 511 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 AC004840.1-201ENST00000636359 365 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.72□□□□□ -0.05
PKNOX1P55347 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 CBFA2T3-202ENST00000327483 4033 ntAPPRIS ALT2 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 AC022144.1-201ENST00000602255 1580 ntBASIC14.72□□□□□ -0.05
PKNOX1P55347 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
PKNOX1P55347 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC14.72□□□□□ -0.05
PKNOX1P55347 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms